Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02556 ATGAAGGCATGGCCAGCTAGTGTTATATACTCTTCACAAGAAAACACCAATGGCCTAAGCCATCACCCATCTTCCACTTCCTCCTCTTCCTATTCTTCTTCTTCTTCAATGGGAATGGTCTATGCAGACATGGGTTCTCTATCTCTTTGCTCCAACCATGGTGTTGTTTCAGCTGTTTCTTCATCTCAAGATTGCTTTGCTTCTAAGAGCTTTGCAATGGAAAAGGGTAGTACTAGTTGGGCTTTACCGTTTATGAGGGAATACCTTGCAAACACTGATGTTGTGGAGGGTAAAGGGTCTGATTGCAGTGATGGAGGTGGGGGGAACAGTGAGAAAATTAACCATAATGCAAACTTTAACGAAGAGAACCCTAATGAGAATTGTGTCAGTGGCAAAGAGGCAGATACTGGGCATTCCAAACTATGTGCAAGAGGGCATTGGAGACCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGACCTCAAAACTGGAACCTGATAGCCGAAAAGTTAGAAGGCAGATCAGGCAAGAGCTGTAGGCTGAGATGGTTCAACCAGCTGGACCCGAGGATCAACAGGAGAGCTTTCACTGAAGAAGAGGAAGAAAGGTTAATGCAAGCACATAGGATTTATGGTAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACTGATAATGCTGTCAAGAATCATTGGCACGTTATAATGGCCAGAAAGTACAGAGAACAATCCAGTGCTTACAGGAGGAGGAGGCTGAGCCAATCTGTTTACAGAAGAATGGAGGAAAATATAAGCTTTGTCTCTAGAGACACAACCACAGGGACTGAACCATCACCCTATTGTCTCAATCTCCCAAATGAAGGACTCAACAATAACATGGCTAGTTTCCCATATGCATCCTTCTATGGAGCTGATGGTGGGGTTGAGTATGGTTTAAATGGTTCACCCCACATGATTGGTGGGAAAGAAGCAATCTCAAGCAATATGCAGGCCCCTCCTCATATTGGCTTGTATGCTCCAGAGACACCACTTGATTTCTTCTCTGGTGGTAGAAGCAATGACATGATGGGCGAGTATTTTAGCCAAATCAGATGTTGGGACAGGCCAAGTGATGCACCTCATCCTCATCAACCATCTGGTTCCTACCCTCATTATCCCCAATATATGATGATAATGCAACAGCAAAACAATCACAATTTTTACAGTTTCTCAAATTCTACAGCACCAACAGCTCAGGTATTGGCCAGTGAACCTTCATTATCATCAGTGGCAGAACACAGAGATCAAGTCCTGACCAGTGACCCCCCAGATGCAATTCCACCTCCATTTATTGACTTCCTTGGGGTAGGAGCCACATGA 1374 0.4454 MKAWPASVIYSSQENTNGLSHHPSSTSSSSYSSSSSMGMVYADMGSLSLCSNHGVVSAVSSSQDCFASKSFAMEKGSTSWALPFMREYLANTDVVEGKGSDCSDGGGGNSEKINHNANFNEENPNENCVSGKEADTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLSQSVYRRMEENISFVSRDTTTGTEPSPYCLNLPNEGLNNNMASFPYASFYGADGGVEYGLNGSPHMIGGKEAISSNMQAPPHIGLYAPETPLDFFSGGRSNDMMGEYFSQIRCWDRPSDAPHPHQPSGSYPHYPQYMMIMQQQNNHNFYSFSNSTAPTAQVLASEPSLSSVAEHRDQVLTSDPPDAIPPPFIDFLGVGAT* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02556 457 FunFam MYB transcription factor 144 195 - -
Rops2g02556 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 190 IPR017930 -
Rops2g02556 457 CDD SANT 147 188 IPR001005 -
Rops2g02556 457 Gene3D - 144 195 - -
Rops2g02556 457 ProSiteProfiles Myb-like domain profile. 191 241 IPR001005 -
Rops2g02556 457 CDD SANT 198 238 IPR001005 -
Rops2g02556 457 SMART sant 143 192 IPR001005 -
Rops2g02556 457 SMART sant 195 243 IPR001005 -
Rops2g02556 457 FunFam MYB transcription factor 197 268 - -
Rops2g02556 457 SUPERFAMILY Homeodomain-like 144 237 IPR009057 -
Rops2g02556 457 Gene3D - 197 267 - -
Rops2g02556 457 ProSiteProfiles Myb-like domain profile. 144 190 IPR001005 -
Rops2g02556 457 Pfam Myb-like DNA-binding domain 144 190 IPR001005 -
Rops2g02556 457 Pfam Myb-like DNA-binding domain 196 239 IPR001005 -
Rops2g02556 457 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 191 245 IPR017930 -
Rops2g02556 457 PANTHER MYB PROTEIN-RELATED 128 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02556 Rops-Chr2 41988824 41990674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02556 137 261 MYB Transcription Factor Family AT1G69560 85.827 9.18e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g02556 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02556 K09422 - vvi:100253313 544.658