Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02551 ATGAAGAACAGAACAAGCTCTGAGCTCCCTCCTGGCTTCAGGTTTCACCCAACTGATGAGGAACTAATTGTGTATTACCTCTGTAACCAAGCCACATCAAAGCCATGCCCTGCATCAATCATCCCAGAAGTGGATATCTATAAATTTGATCCATGGGAATTGCCTGATAAAACTGAGTTTGGAGAGAATGAATGGTATTTCTTTAGCCCAAGAGACAGAAAGTACCCAAATGGGGTGAGGCCTAACCGTGCAACCGTGTCAGGGTATTGGAAGGCTACTGGCACAGACAAAGCAATCAATAGTGGATCTAAGCATATAGGGGTGAAGAAATCTTTGGTCTTTTACAAGGGCAAGCCACCAAAGGGCATCAAGACTGATTGGATTATGCATGAGTATCGATTGGTTGGATCAAAGAAACAAGCTAGCAAGCAAATGGGATCTATGAGGCTGGATGACTGCGTTTTGTGCAGGATCTATAAGAAGAAGCACATGGGAAAACCATTGGAGCCAAAAGAGGAATGCTCCTCAACACTCCAAATTACTGATTTTACAGCAGCAAATAATGTTGGTGAAGAGGAAAGGATGAACCTTCAAAGGACTTGTTCCCTTACTTATCTTTTGGATATGAATTACTTGGGTCCAATTTTATCTGATGGCTCCTATTGCTCACCCTTTGATTTTCATATTAACAATGCCAATATTGGAATAGAGCCTTTTGTAAAACCTCAGCCAGTTGAAATGACTAACCATTATGAAGCAGATTCAGGGAAGTACCAAGTGAAACAGGGTCCATTGACTGAGGAGGAACATAGAATGTTTTTACTTGGATTGCAGAATCTTGGCAAAGGTGATTGGAGAGGAATTTCACAAAATTATGTTGTATCAAGGACACCCAGTCAAGTGGCCAGTCATACTCAAAATTATTTCAGCAGGCAAAACAATGTGTCTAGAGGGAAAAGACGTTTCAGTGTTTTTGATATTGTTGCAGATGAATCAGCCAACTCACCCATGGTACAGCAAGAGCTCATTCCTGCTAATCAACAACAGGCTGAAACAGAATGCAATAACCCCTTGCCTGATCCTCCAGCCCTTGATGAAGAGTGA 1104 0.4185 MKNRTSSELPPGFRFHPTDEELIVYYLCNQATSKPCPASIIPEVDIYKFDPWELPDKTEFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAINSGSKHIGVKKSLVFYKGKPPKGIKTDWIMHEYRLVGSKKQASKQMGSMRLDDCVLCRIYKKKHMGKPLEPKEECSSTLQITDFTAANNVGEEERMNLQRTCSLTYLLDMNYLGPILSDGSYCSPFDFHINNANIGIEPFVKPQPVEMTNHYEADSGKYQVKQGPLTEEEHRMFLLGLQNLGKGDWRGISQNYVVSRTPSQVASHTQNYFSRQNNVSRGKRRFSVFDIVADESANSPMVQQELIPANQQQAETECNNPLPDPPALDEE* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02551 367 Gene3D - 266 314 - -
Rops2g02551 367 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Rops2g02551 367 Pfam Myb-like DNA-binding domain 264 309 IPR001005 -
Rops2g02551 367 NCBIfam myb-like DNA-binding domain, SHAQKYF class 266 312 IPR006447 GO:0003677
Rops2g02551 367 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Rops2g02551 367 MobiDBLite consensus disorder prediction 345 367 - -
Rops2g02551 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 313 IPR017930 -
Rops2g02551 367 CDD SANT 266 309 IPR001005 -
Rops2g02551 367 SMART sant 261 311 IPR001005 -
Rops2g02551 367 FunFam transcription factor MYB1R1 263 314 - -
Rops2g02551 367 FunFam NAC transcription factor 18 165 - -
Rops2g02551 367 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Rops2g02551 367 SUPERFAMILY Homeodomain-like 266 314 IPR009057 -
Rops2g02551 367 PANTHER NAC TRANSCRIPTION FACTOR 56 9 179 - -
Rops2g02551 367 ProSiteProfiles Myb-like domain profile. 257 309 IPR001005 -
Rops2g02551 367 SUPERFAMILY NAC domain 6 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02551 Rops-Chr2 41831191 41836785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02551 1 215 NAC Transcription Factor Family AT1G69490 67.699 2.22e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g02551 NAM 9.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02551 - - gmx:100785110 433.335