Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02550 ATGTCAGAAGAAGAAGAATACTTGCAACAACTGAGATCCAAAGCTACAGAGCTTTTCATCAGAGAAGAATGGAAGGACTCTATTGAAGCTTATTCCCACTTCATCACTCTCTGCACCCAACAAATCTCTAATTCTCACAACAACACTGACCCACTTCACCTCCAGAAGCTTCGCAAGTCCCTCTGCATAGCCCTCTGTAACCGTGCTGAAGCAAGGTCCAAATTGCGAGACTTGAACAACGCCTTGCAAGATTGTGATCTCGCTTTGGAAGTTGATGCCACCCACTTCAAGACCCTTGTGTGCAAAGGTAAGATCTTGCTTGGCCTCAACAGGTATTCCATGGCACTTGAGTGCTTCAAAACCGCTCTTCTTGATCCTCAAGCTGGTGGGAACTCAGAATGCCTTAGTGGGTACTTGCAGAAATGCAAAAAGTTTGAGTTTTTATCAAGGACAGGGTCCATGGATCTCTCAGGTTGGGTTTCAAGTGGGTTCCAGGGTAAGGCTCCAGAACTTGCAGAGTACATTGGTGCAGTGCAGATCAGGAAATCTGAGATCAGTGGGCGTGGCCTGTTTGCAACCAAGAACATTGATGCAGGGTCCTTGATTTTGGTCACCAAGGCAATTGCCATGGAGAGGAGTATATTGGCAGGGAAAGATTTGAGTGAGGATGCACAGTTAGTGATGTGGAAGAATTTCATTGATAAAGTTGTTGACTTTGCTAGAAAATGTCATAAGACAAGGAATTTGATTGGTAAGTTGTCAAGTGGGGAAAATGAGGATGAACTTGAAGTACCTGATGTTGATCTCTTTAGGCCTGAGTCTCTGGAGAATGTGCATTTAAGTGACGAGGATATGGTTAAGTTATTTGCCATATTGGATGTTAATTCCCTTACTGAGGATGCAATTTCAGCTAATGTCTTGAGGAAGAACAATGATTGTTATGGTGTTGGGCTGTGGTTGCTCCCTTCCTTCATCAACCATTCATGTTGTCCCAATGCAAGGCGCTTGCATGTTGGGGACTACTTGATAGTTCATGCTTCCAAGGATTTGAAGGCCGGTGAAGAGATCACTTTTGCCTATCTTGACCCTTTGTCATCCTTGAACAACAGAAAGGAGATGTCATTGACATGGGGAATTCATTGCAAGTGTAAGAGATGCAAGTTTGAGGGAGAAATCTTCTCCAAACAAGAGATGAAAGAGATTGAGATTGGTCTTGAAAGAGGGATGGATGTGGGTGGTGTGGTATACAAACTAGAGGAACAGATGAAGAGATGGAAGGTGAGGGGGAAAGAGAAAGCCTATTTGAGGGCTTCATTTTGGTCTGCATATTCAGAAACTTATAGGTCTGAGAGGTCAATGAAGAGGTGGGGAAGGAGGATTCCTACACTGGATGCTGTGGTTGATAGCATCACAGATGTAGTGGGAGGTGATCACAGATTGCTTAAGATCCTAATGGAGGAGTTGAAGAAAAATGGTAGAGGCCATGTGGAGATGGAGAAAGCTTTCAAGTTGGCAAGGGAGGTGTATGGAAAGGTGGTGAAAAAACAAGCAATGAGGGTGCTACTTGAGTTCTGCATTAGTGATTGA 1587 0.4405 MSEEEEYLQQLRSKATELFIREEWKDSIEAYSHFITLCTQQISNSHNNTDPLHLQKLRKSLCIALCNRAEARSKLRDLNNALQDCDLALEVDATHFKTLVCKGKILLGLNRYSMALECFKTALLDPQAGGNSECLSGYLQKCKKFEFLSRTGSMDLSGWVSSGFQGKAPELAEYIGAVQIRKSEISGRGLFATKNIDAGSLILVTKAIAMERSILAGKDLSEDAQLVMWKNFIDKVVDFARKCHKTRNLIGKLSSGENEDELEVPDVDLFRPESLENVHLSDEDMVKLFAILDVNSLTEDAISANVLRKNNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLIVHASKDLKAGEEITFAYLDPLSSLNNRKEMSLTWGIHCKCKRCKFEGEIFSKQEMKEIEIGLERGMDVGGVVYKLEEQMKRWKVRGKEKAYLRASFWSAYSETYRSERSMKRWGRRIPTLDAVVDSITDVVGGDHRLLKILMEELKKNGRGHVEMEKAFKLAREVYGKVVKKQAMRVLLEFCISD* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02550 528 SMART tpr_5 62 95 IPR019734 GO:0005515
Rops2g02550 528 SMART tpr_5 96 128 IPR019734 GO:0005515
Rops2g02550 528 SMART tpr_5 8 41 IPR019734 GO:0005515
Rops2g02550 528 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 4 521 - -
Rops2g02550 528 CDD SET_SMYD 289 386 - -
Rops2g02550 528 Coils Coil 68 88 - -
Rops2g02550 528 SUPERFAMILY TPR-like 6 123 IPR011990 GO:0005515
Rops2g02550 528 SUPERFAMILY SET domain 177 387 IPR046341 -
Rops2g02550 528 Pfam SET domain 187 360 IPR001214 GO:0005515
Rops2g02550 528 ProSiteProfiles SET domain profile. 176 361 IPR001214 GO:0005515
Rops2g02550 528 Gene3D SET domain 276 390 IPR046341 -
Rops2g02550 528 Gene3D Tetratricopeptide repeat domain 1 146 IPR011990 GO:0005515
Rops2g02550 528 SMART set_7 176 367 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02550 Rops-Chr2 41813240 41814955 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops2g02550 SET 4.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02550 - - mtr:11446296 868.611