Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02545 ATGGGTAGGTCACCATGCTGTGAAAAGGTAGGGTTGAAGAAAGGGCCATGGACCCCTGAGGAAGACCAAAAGCTCATGTCTTACATTGAAGAATTTGGCCATGGAAGCTGGCGTGCATTACCTGCCAAAGCTGGCCTTCAAAGATGTGGGAAGAGCTGCAGATTGAGGTGGACTAACTACCTCAGACCTGATATTAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATTATTCAACTTCATGCCCTCCTTGGAAACAGATGGTCAGCCATAGCAGCTCAACTGCCAAAGAGAACCGACAATGAAATCAAGAACTATTGGAACACACACCTCAAGAAAAGGCTAACAAGAATGGGCATAGACCCCACCACCCACAAGCCAAAAACTGAATCAATGGACGCATCCAACCTTAGCCACATGGCTCAGTGGGAAAGTGCTCGTTTAGAAGCCGAAGCAAGGCTCGTGAGAGAATCAAAGTCGAGACTCGGATCTAGCTCCTCCCCACAACCCACACGCCTTGTTCTCAACAAAATCACAACACAACAACCATCACTGCCACCTTGCTTAGACATTCTCAAAGCATGGCAAAGTTCTTGGTCTTCTAAACCAACAACATCCAAAGATGATAACAACCACCATAACAACAACAAAATGCAAAGCATGTATGCCATGATGCTATCCACTGATGACACCCTTGAATCCCCAACTTCCACATTGAGTTTCCCAGGAAACGTGCTTCCACTTCCTCTCCCAACCACAACCAACAACAACGTTGGATTATTCAATGAAAATTTACTTCCTTTCACCAACAATAACCTCACCACATCCATTGACCAATTCATAAAATGTTCAACCACCAATGACAATGAGCCATGGAGATGTTTAACCCAAGAAGGTGAAAGGAGAGTGAACGACACGTCGTTGAACTTGCAAGACGACGACATCATGGCTGCTGTGGAAGCATTTAGATCTGCACGATACGACAATATTAATATCCCCCAACTTTCCGCCAATAATGTCCTCGAACCTCTCAACAATGATGATGCTTTGGTTTATGATTCTTCAAACGATAACTTAGGAGAGGAAAACTTGCCAACGGTTAATGGGGATGGAAACATGTGCAATGTGAACCTTCAAGAGAATAAGCAGTACTGGAATAGTATACTTAGCTTCGTTAATGAGTCACTGTCTGGTTCCTCGGTCTTTTGA 1212 0.4439 MGRSPCCEKVGLKKGPWTPEEDQKLMSYIEEFGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPKRTDNEIKNYWNTHLKKRLTRMGIDPTTHKPKTESMDASNLSHMAQWESARLEAEARLVRESKSRLGSSSSPQPTRLVLNKITTQQPSLPPCLDILKAWQSSWSSKPTTSKDDNNHHNNNKMQSMYAMMLSTDDTLESPTSTLSFPGNVLPLPLPTTTNNNVGLFNENLLPFTNNNLTTSIDQFIKCSTTNDNEPWRCLTQEGERRVNDTSLNLQDDDIMAAVEAFRSARYDNINIPQLSANNVLEPLNNDDALVYDSSNDNLGEENLPTVNGDGNMCNVNLQENKQYWNSILSFVNESLSGSSVF* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02545 403 Gene3D - 68 140 - -
Rops2g02545 403 CDD SANT 69 112 IPR001005 -
Rops2g02545 403 CDD SANT 16 61 IPR001005 -
Rops2g02545 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops2g02545 403 Gene3D - 13 66 - -
Rops2g02545 403 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g02545 403 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops2g02545 403 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 220 - -
Rops2g02545 403 FunFam MYB-related transcription factor 13 66 - -
Rops2g02545 403 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops2g02545 403 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g02545 403 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops2g02545 403 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops2g02545 403 SMART sant 13 63 IPR001005 -
Rops2g02545 403 SMART sant 66 114 IPR001005 -
Rops2g02545 403 FunFam MYB transcription factor 68 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02545 Rops-Chr2 41661921 41663500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02545 1 253 MYB Transcription Factor Family AT3G01140 59.559 2.71e-102 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g02545 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02545 K09422 - gmx:100809025 513.842