Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02539 ATGGGTAGGTCATCACTCTGTGAAAAGGTTGGGTTGAAGAAAGGGCAATGGACTCCTGAGGAAGACCAGAAGCTTAGGGCATACATTGAAGAATTTGGCCATGGAAGCTGGCGTACATTGCCTGCCAAAGCTGGCCTTCAAAGATGTGGGAAGAGCTGCAGATTGAGGTGGACTAACTACCTCAGACCTGATATTAAAAGAGGAAAGTTCAGCTTGCAGGAAGAGCAAACCATCATTCAACTTCATGCCCTCCTTGGAAACAGATGGTCAGCCATAGCAGCTCAACTGCCAATGAGAACTGACAATGAGATAAAGAACTATTGGAACACACGCATCAAGAAAAGGCTAACAAGATTGGGCATAGACCCTACAACCCACAAGCCAAGAACTGAATCCATGGACGCATCCAAGCTTAGACACATGGCACAGTGGGAAAGTGCTCGTCTCGAAGCCGAAGCAAGACTCGTGAAGTTGAGGCTTGGATCCTGCTCCAACCCTCAGCCCATGCGCCTCGTTCTCAAGAAAATCACAACACAACAACCATCACTGCCACCTTGCCTAGACATTCTCAAAGTATGGCAAAGTTATTGGTCTTCTGAAGCACCAACAACAACCAAAGACTACAAAATGCACTGCATGTATGCAATGATGCTATCCACTGATGATAATACCCTTGAATCCCCAACTTCCACGTCGAGCTTCCAAGGAGACGTGCTTCCTCTTCCTCTCACAACCACAACAAACACCGTTGGATTGTTCGGTGAAGATTTACTTCCTCTCACCACCACTAACGCCACATCCATTGACCAATTCATCAAAAGTTCAACCACCAATGACAATGAGGCATGGAGATGTTTAACCCAAGAAGGTGAAAGGAGAGTGAACTTGCAAGACGACGACATCATGGCAGCTGTGGAAGCTTTTAGATCTTCACGATACGACAACATTAGTATCCTCGAACCTCTCGACAATGATGATACGTTTGTTTATGATTCTTCAAACAATAACTTGGGAGAGGAAGACTTGGCAATGATCAACGGGGATGAAAACATATATCACGTGAACTTTCAAGAGAACAGTACTGGAATGCTATGA 1095 0.4539 MGRSSLCEKVGLKKGQWTPEEDQKLRAYIEEFGHGSWRTLPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIAAQLPMRTDNEIKNYWNTRIKKRLTRLGIDPTTHKPRTESMDASKLRHMAQWESARLEAEARLVKLRLGSCSNPQPMRLVLKKITTQQPSLPPCLDILKVWQSYWSSEAPTTTKDYKMHCMYAMMLSTDDNTLESPTSTSSFQGDVLPLPLTTTTNTVGLFGEDLLPLTTTNATSIDQFIKSSTTNDNEAWRCLTQEGERRVNLQDDDIMAAVEAFRSSRYDNISILEPLDNDDTFVYDSSNNNLGEEDLAMINGDENIYHVNFQENSTGML* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02539 364 FunFam MYB transcription factor 68 129 - -
Rops2g02539 364 SMART sant 13 63 IPR001005 -
Rops2g02539 364 SMART sant 66 114 IPR001005 -
Rops2g02539 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops2g02539 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Rops2g02539 364 Gene3D - 13 66 - -
Rops2g02539 364 Gene3D - 69 116 - -
Rops2g02539 364 CDD SANT 69 110 IPR001005 -
Rops2g02539 364 FunFam Transcription factor RAX3 7 67 - -
Rops2g02539 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 261 - -
Rops2g02539 364 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops2g02539 364 CDD SANT 17 61 IPR001005 -
Rops2g02539 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops2g02539 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Rops2g02539 364 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Rops2g02539 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02539 Rops-Chr2 41524516 41526223 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02539 1 157 MYB Transcription Factor Family AT5G15310 76.970 7.20e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g02539 Myb_DNA-binding 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02539 K09422 - gmx:100809025 422.165