Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02506 ATGGAAGAGAGGAAGTTTGTGTGCAAGTATTGCTGCAAGAGGTACCCTTGTGGGAAGTCTCTGGGTGGTCACATCAGGACCCATATGACTGAAGAAAGAAGTAATGTTGATAGTGACATGTTCAAGTTGGATGGTGAGAGGAAAAAGAAGAGAGATTTATGGTCTGAAACTGGTGGTGGGAACTCCATTTATGGCCTCAGAGAGAACCCCAAGAAAACAACAAGGTTTGTGCATTCCAATGTCACCTTGGAGCAAGAGGAGAAGTTCTGCAAAGAATGTGGGAAAGGCTTCCCTTCATTGAAAGCTCTCTGTGGTCACATGGCTTGTCACTCAGAGAAAGAGAAGAGGATCAACAAGTTTGAAGATGGTGGTGAGAAGGAAAAATTGGCTATGGATGATGATAGTCAATCTGATACTGAGACTTTTGCTCCAAGGAGATCCAAGAGAATGAGGTTCAAGTCCCTATCCCTTGCCAATAATCACCCTTCTTCTTCTGCTGTTCCTTTGGCCAATGGTTCTTCACCTGTGTCAGAGGTTGAGCAGGAGCAAGAAGAGGTTGCTAGGTGCTTGATGCTTTTGTCCAAAGATTCTAGTCACAAGGGTCGTTTTGGTTCTGAATCTTCTGATGACAACTCGGTTGTTCTTGAAGCAAAATCGTCGTCTCTTGATACGAGGATTGCGGTGAATAATAGCAACAACTTTGTATCTAATGCTTATGAACTTGGGGAGAAGAAGCTGGTGAAGAGTATCAAGTTAAAGTCTGTTGGGATTGGTGTTTCTGATAATTCAGATTCCAGGTGTTTCAGATATGGTCCAAAAACCAAAATGGTAGATTCTGATTTTTCAAATGATGAATTTAAGAGGCTGAAGATGGGAGATAAGTCTAAGCTTGAGGATGACAATTTAGAATTGAACAGAGGCAGAAGCAAATACAATGTTACTGTATTCAACAAATTAGTCATGGAGGATGTGGATCATGATAGAAAAGATGGAACTACAAGGAAATTCGATTCGAGAAAGAGAGCTAACTATGATTCTCTTGGTCACCATTTAGATGGCGTTTCTAGCAAGAAGACAACAAATGGTTTTACCAATGATGAAATCTATGAGAATGGTAGAAAAGGTTGGAAATATGAGTGCTTGGCTGGTGAAAGGGACAATGGTTCGTATGATTCAATAGATGAGAGTGATGAAGATAGCTCAGAAGCTGATTCTTTTCCTGCTCCCAAGTCTCATAAGAGTAAGGTTCTCAATGGAAAGAAGTCCAACAAAGCCGAGAAGAAATTGAAGTCAAAGAAAAGCAGGGAACATGAGTGCCCAATTTGCTACAGAATTTTCAAGTCAGGCCAAGCCTTAGGAGGTCATAAAAGATCCCATTTTATTGGAGGTTCTGAAGAAAACACTCTGGTGATCAAACAAGGTGCTCCTGCAGTTCCTTGCCTGATTGATCTCAATCTACCTGCTCCAGTTGATGATTAG 1479 0.4131 MEERKFVCKYCCKRYPCGKSLGGHIRTHMTEERSNVDSDMFKLDGERKKKRDLWSETGGGNSIYGLRENPKKTTRFVHSNVTLEQEEKFCKECGKGFPSLKALCGHMACHSEKEKRINKFEDGGEKEKLAMDDDSQSDTETFAPRRSKRMRFKSLSLANNHPSSSAVPLANGSSPVSEVEQEQEEVARCLMLLSKDSSHKGRFGSESSDDNSVVLEAKSSSLDTRIAVNNSNNFVSNAYELGEKKLVKSIKLKSVGIGVSDNSDSRCFRYGPKTKMVDSDFSNDEFKRLKMGDKSKLEDDNLELNRGRSKYNVTVFNKLVMEDVDHDRKDGTTRKFDSRKRANYDSLGHHLDGVSSKKTTNGFTNDEIYENGRKGWKYECLAGERDNGSYDSIDESDEDSSEADSFPAPKSHKSKVLNGKKSNKAEKKLKSKKSREHECPICYRIFKSGQALGGHKRSHFIGGSEENTLVIKQGAPAVPCLIDLNLPAPVDD* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02506 492 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Rops2g02506 492 MobiDBLite consensus disorder prediction 347 366 - -
Rops2g02506 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 437 459 IPR013087 -
Rops2g02506 492 SMART c2h2final6 6 28 IPR013087 -
Rops2g02506 492 SMART c2h2final6 437 459 IPR013087 -
Rops2g02506 492 SMART c2h2final6 88 110 IPR013087 -
Rops2g02506 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Rops2g02506 492 ProSitePatterns Zinc finger C2H2 type domain signature. 439 459 IPR013087 -
Rops2g02506 492 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 491 - -
Rops2g02506 492 MobiDBLite consensus disorder prediction 120 146 - -
Rops2g02506 492 SUPERFAMILY beta-beta-alpha zinc fingers 89 459 IPR036236 -
Rops2g02506 492 Pfam C2H2-type zinc finger 6 30 - -
Rops2g02506 492 Pfam C2H2-type zinc finger 437 459 - -
Rops2g02506 492 Pfam C2H2-type zinc finger 90 112 - -
Rops2g02506 492 SUPERFAMILY beta-beta-alpha zinc fingers 2 32 IPR036236 -
Rops2g02506 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Rops2g02506 492 MobiDBLite consensus disorder prediction 389 432 - -
Rops2g02506 492 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02506 Rops-Chr2 40977512 40979634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02506 1 492 C2H2 Transcription Factor Family AT1G26610 43.048 3.80e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g02506 zf-C2H2_6 0.00052 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02506 - - vun:114177115 573.163