Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02471 ATGATGTCTTCTTCCAGGTCAAGTCGAAGAGTTGGTAGTTGTAGAGTTGCAGTAGAAAATCGAGCCACATTACCACCGCTGCCCATTTCTACAACAAATTTGCAAAGGGATGAGATTAAGCCACTTTCAGGAGAACCATACTGTCATGTGGTTCTTTTAGAATCACATCTTGGTCCCCAATATAAAATGGGGCCGTCAACCAACTTATACTCAAAACTTCCGAATGATGTGGTGGTCCCTACAGTTCTCAACTATGGGGGCAAGAGATGGGACATGATTTATAATGGACAAAGCAAAATTTGCAAGAGGTTTACTCGCAACGGCTGGAAAAAATTTGCTGAAGATAATGGTTTGAAGGTTGGAGATGCATGCATTTTTGAGCTCAAGGAAAGCAGTGAAGAGAAAGTCATCTTTGAAGTTCAAATTCTTAGAGGTGACATCCCATCCAAATTTTTTGAAATTGGTGAGAGTGCAGAAAAGCCAATTGTCATTGCCTAG 498 0.4096 MMSSSRSSRRVGSCRVAVENRATLPPLPISTTNLQRDEIKPLSGEPYCHVVLLESHLGPQYKMGPSTNLYSKLPNDVVVPTVLNYGGKRWDMIYNGQSKICKRFTRNGWKKFAEDNGLKVGDACIFELKESSEEKVIFEVQILRGDIPSKFFEIGESAEKPIVIA* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02471 165 CDD B3_DNA 46 144 IPR003340 GO:0003677
Rops2g02471 165 SUPERFAMILY DNA-binding pseudobarrel domain 44 137 IPR015300 -
Rops2g02471 165 SMART B3_2 48 146 IPR003340 GO:0003677
Rops2g02471 165 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 43 148 IPR044837 -
Rops2g02471 165 Pfam B3 DNA binding domain 81 138 IPR003340 GO:0003677
Rops2g02471 165 Gene3D - 32 146 IPR015300 -
Rops2g02471 165 ProSiteProfiles B3 DNA-binding domain profile. 81 146 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02471 Rops-Chr2 40365247 40373626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02471 82 146 REM Transcription Factor Family AT4G33280 33.846 4.52e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops2g02471 B3 1e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02471 - - tpra:123884363 184.111