Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02468 ATGGAGTTAGAGGTAAAAGCGGTGGGAAGCATAGACAACTGTTTCGTATCCCTTCCCTTACCTCTCATCCAAACTCTTCAGTCCACTCGCTCAACTCCACTTCCTGAAATTCTCGCTCTCGAGCTTCGCTCTCTCTCTCACCCTCCTCACACCTGGTTCGTCGCTTGGTCCGGTGCCACTTCTTCTTCTTCTTCCGCCATAGAAGTTTCTCAACGGTTTGCGGAATGCGTTTCGTTGCCGAATCATGCTGCAGTTCAAGTGAGAGCTGCTTCTAATGTGCCACATGCTTCTCTGGTTACAATCGAGCCACACACGGAAGATGATTGGGAAATATTGGAGCTCAATTCTGAACAAGCTGAGGCTGAGATACTCAATCAGGTCAGGATTGTCCATGAAGGGATGAGATTTCCTTTGTGGTTGCATGGTCACACTGTCATCACATTCCACGTGGCTTCTGTTTTCCCGAAGAATGTGGTGGTACAACTCATGCCAGGAACTGAAGTTGCTGTTGCTCCAAAAAGACGCAAAAGAATTTCAGATTCAGCTGGAGATTCACATCTAGACTCCTATAACAACGAGCATACTGCAAAGATGCTGCTCCGTTTACAAGATCCGGATGGGTTATGTTGCACCAGGAGGACTTATGTCAAAGGTGTTGAGCTCTATGTAGGGCTTACTTCTGCTGCTTTTGTTCATCCAGAAACAGCAAAACACTTCTCATTTAACATGCTTCAGTTGGTTTCCATAGTGCCAAGAGTATCCAAGGAGAATGTTAATATATCCAGAACCAATATTATGAAAGCCAAAGGTGGTTCAGCTGTTAATGAAATTGAGAACGGAAATACTGACAAGAAAGAATATCGACAAGCAATTGTTCATCTGTTGATTTCAGAATCTGTGGCCAAAGGACATGTAATGGTAGCTAAGCCTCTTCGCCTTTATTTGAGAGCCAGCCTGCATTCATGGGTTTATTTGAAGGCATGTGATATTATTTTGGAAAAAAGTATTCCTTCCATCTCTCTTTGTCCTTGCCAGTTCAAATTGTTAAGGAAGGAGAATGCCGTTGACAAAGATGGTCTAGAAGATTTTCATGCCCACAAGAATCAAATTGACGAGAAATCGCATACAAAAGCTACTTCAGGTGTCTTTGTGGATACCATAGATTGGTTGATCCACAATGAAGTTGTTTCAGCTCTTTCTGATGAATCTAATCACAAAGCAGAGGAAGAGGCTGCAAATCAGTCTCAGAATCAAAAGGGGTTACAGAGTCTTGTACGACTATGGTTTATTGCACAACTGGAGGCAATTACTTCCATTATGGGTATGGAGGTTAATTCATTGGTTATAGGCAGTAAAACCTTGCTTCATTTTGAATTAAGCTACAAGCTCGGGAGTGATGGGAAGGTTCAGCTGACTTATTCAGAGAACAGTGGCAAGGCAGCTGAAATGTTATTTTTATTGAACTTTGGTGAAGAATATCTGCATCATGGGAAACTTAATGCATATGAAGTTTCTCTTGGTGGAAGACTCAGTAACATCAATGTTGGAGATCTGAAGCTTTTTGAAAGGATGAAATTGGGTGATCCTCTTTCTATTCATTCTGTAGAAGAGAGAGCCTCTGAAGACCACATTAGTTCAAATGTATCTTTTCTTGGCTGGATGGAGAAAACTGCTTCTGATGTTATCAATCGGATGTTGGTACTGTTATCTTCAGCATCTGGTTTGTGGTTTGGCTCATACAATTTGCCACTTCCTGGACATGTTCTAATATATGGACCTCCAGGCTCTGGAAAAACTATATTAGCAAGGACTGTAGCAAAATCCCTTGAGATTCGTGAAGGCATCTTAGCACACATAATTTTTGTTTCGTGCTCAAAACTTGCTTTGGAGAAGGTCCCAATTATTCGCCAAGAACTCGCAAACCATGTAACTGAAGCTTTAAACCATGCCCCTTCCATTGTCATCTTTGATGATCTTGATAGCATAATTTCTACCCCTGACTCCGAAGGATCTCAGCCTTCAACATCTGTTGCTGGACTCACTGATTTTCTGGTTGACATCTTGGATGAATACGGAGAGAAGAGGCGGAAGTCATGTGGATTCGGACCAATAGCCTTCATAGCTTCTGTACAATCCCTAGAGAGCATACCACAGTCTTTGAGCTCTTCAGGACGGTTTGATTTTCACATAAAGCTGCCTGCTCCGGCAGCTTCTGAGCGCAGGGCAATGTTGAAGCATGAAATACAAAGGCGTCAATTGCAATGTGATGATGACATCCTTCTTGATGTGGCTGTAAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTAGTTGACAGAACTGTCCATGCCGCTGTTCGCCGATTTCTGCCGTCTAATGCCACCATTTGTGAGCATGAGAGTCCTGCTTTACTAAGGGAGGATTTCTCTCAGGCAATGCATGATTTTCTTCCAGTTGCAATGCGTGACATCACAAAATCTGCTTCTGATGATGGTCGTTCTGGATGGGATGATGTGGGTGGTCTTGTTGATATTCGAAATGCTATTAAGGAGATGATAGAGTTGCCATCAAAGTTTCCAAAAACTTTTGCACAAGCACCGTTGAGGTTGCGGTCAAATGTCCTTTTATATGGTCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCTGCTGCTGCTTCTTCACTTCGATTTATATCAGTGAAAGGGCCAGAGCTGTTAAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCAGCTGCAGCACCATGCCTACTTTTTTTTGATGAATTTGATTCTATTGCTCCCAAGAGAGGCCATGACAATACTGGAGTTACTGATCGTGTTGTTAATCAATTTTTGACTGAGTTAGACGGTGTTGAGATTTTAACGGGTGTATTTGTGTTTGCTGCAACCAGTAGACCGGATTTACTTGATGCAGCACTGTTGAGACCGGGTAGGTTGGATCGTCTTCTATTTTGTGACTTTCCATCTTGGAATGAGAGATTGGAAATTCTCACAGTACTTTCTAGAAAGTTACCAATGCCCAATGACATTGATTTGGCTACAGTAGCTAATGTGACTGAGGGATTCAGTGGAGCTGATCTCCAGGCTCTCCTCTCAGATGCACAGCTTGCAGCAGTTCATGATGTTCTGGACAATGTGAATGCCTCTAGACCAGAGAAAACACCTGTTATTACTGATACTCTTCTGAAGTCCACTGCATCCAAGGCTAGACCATCTGTTTCAGAAGAGGAGAAAAGAAGACTCTACAGTATTTATCGCCAGTTCCTGGATTCCAAGAGATCCGCTGCTGCCCAGACTCCTCTAAACAGTTTCAGCTTTGGTGCCAATTTTGCTCGAGTCTCCTCTTTCCTTGGAGAATGTAAAGTGGATGTTGATTGA 3432 0.4277 MELEVKAVGSIDNCFVSLPLPLIQTLQSTRSTPLPEILALELRSLSHPPHTWFVAWSGATSSSSSAIEVSQRFAECVSLPNHAAVQVRAASNVPHASLVTIEPHTEDDWEILELNSEQAEAEILNQVRIVHEGMRFPLWLHGHTVITFHVASVFPKNVVVQLMPGTEVAVAPKRRKRISDSAGDSHLDSYNNEHTAKMLLRLQDPDGLCCTRRTYVKGVELYVGLTSAAFVHPETAKHFSFNMLQLVSIVPRVSKENVNISRTNIMKAKGGSAVNEIENGNTDKKEYRQAIVHLLISESVAKGHVMVAKPLRLYLRASLHSWVYLKACDIILEKSIPSISLCPCQFKLLRKENAVDKDGLEDFHAHKNQIDEKSHTKATSGVFVDTIDWLIHNEVVSALSDESNHKAEEEAANQSQNQKGLQSLVRLWFIAQLEAITSIMGMEVNSLVIGSKTLLHFELSYKLGSDGKVQLTYSENSGKAAEMLFLLNFGEEYLHHGKLNAYEVSLGGRLSNINVGDLKLFERMKLGDPLSIHSVEERASEDHISSNVSFLGWMEKTASDVINRMLVLLSSASGLWFGSYNLPLPGHVLIYGPPGSGKTILARTVAKSLEIREGILAHIIFVSCSKLALEKVPIIRQELANHVTEALNHAPSIVIFDDLDSIISTPDSEGSQPSTSVAGLTDFLVDILDEYGEKRRKSCGFGPIAFIASVQSLESIPQSLSSSGRFDFHIKLPAPAASERRAMLKHEIQRRQLQCDDDILLDVAVKCDGYDGYDLEILVDRTVHAAVRRFLPSNATICEHESPALLREDFSQAMHDFLPVAMRDITKSASDDGRSGWDDVGGLVDIRNAIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAASSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWNERLEILTVLSRKLPMPNDIDLATVANVTEGFSGADLQALLSDAQLAAVHDVLDNVNASRPEKTPVITDTLLKSTASKARPSVSEEEKRRLYSIYRQFLDSKRSAAAQTPLNSFSFGANFARVSSFLGECKVDVD* 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02468 1143 Gene3D - 534 735 IPR027417 -
Rops2g02468 1143 Gene3D - 836 1098 IPR027417 -
Rops2g02468 1143 Gene3D - 94 173 - -
Rops2g02468 1143 FunFam Peroxisome biogenesis factor 1 94 173 - -
Rops2g02468 1143 Pfam AAA+ lid domain 1027 1065 IPR041569 -
Rops2g02468 1143 CDD RecA-like_PEX1_r2 846 1003 - -
Rops2g02468 1143 ProSitePatterns AAA-protein family signature. 975 993 IPR003960 GO:0005524|GO:0016887
Rops2g02468 1143 Gene3D - 1006 1085 - -
Rops2g02468 1143 FunFam Peroxisome biogenesis protein 1 736 816 - -
Rops2g02468 1143 SMART AAA_5 871 1007 IPR003593 GO:0016887
Rops2g02468 1143 SMART AAA_5 584 736 IPR003593 GO:0016887
Rops2g02468 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 815 IPR027417 -
Rops2g02468 1143 PANTHER AAA-FAMILY ATPASE 233 1104 - -
Rops2g02468 1143 SUPERFAMILY Cdc48 domain 2-like 94 172 IPR029067 -
Rops2g02468 1143 Pfam Peroxisome biogenesis factor 1, N-terminal 99 172 IPR015342 GO:0005524|GO:0005777|GO:0007031
Rops2g02468 1143 Pfam ATPase family associated with various cellular activities (AAA) 875 1002 IPR003959 GO:0005524|GO:0016887
Rops2g02468 1143 Pfam ATPase family associated with various cellular activities (AAA) 588 733 IPR003959 GO:0005524|GO:0016887
Rops2g02468 1143 FunFam Nuclear valosin-containing protein-like 833 1011 - -
Rops2g02468 1143 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 837 1099 IPR027417 -
Rops2g02468 1143 Gene3D - 736 815 - -
Rops2g02468 1143 FunFam Peroxisome biogenesis protein 1 541 735 - -
Rops2g02468 1143 SUPERFAMILY ADC-like 10 89 IPR009010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02468 Rops-Chr2 40320801 40341211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02468 585 791 Calmodulin-binding Proteins AT3G56690 31.731 1.65e-13 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02468 K13338 - gmx:100803882 1913.66