Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02453 ATGGAAAGAGGCGGTTACAGAGGCGGTGGCAGAAGAGGAGGAGGAGGAGGCCGTCGTGGTGGTGGTGCCGGCGGCAGAGGGTTTCCTCCCCAATCTCAACAACATCAGTGGCAAAGGACAAACCCCGCTTCCTCTTCCTACGCTCAAACTCGAAGTCCAAGTGGGTCTTCAAATCCTCCTCCTACCTCCGAGCCCTACCACACTCCCCAATCTCAACAACATCAGTGGCAAAGGACAAACCCTTCTTCCTCTTCCTACGCTCAAACTCGAAGTCCAAGTGGATCTTCTTCAAATCCTCCTCACGCTCAAACTCGAAGTCCAAGTGGATCTTCTTCAAATCCTCCTCCTCCTCCTTCTAGCTCCTCCAAGCCCTACCACCACACTCCCCCTCAAACCCTAACTCATCCAGATGTTGGGGCTCTGAAAATATCAGATCAAACAACATTGGAGAACATTACACCTGTACACAGGCCTGACCAAGGGGGAACACTAGCAATTCGAAAGTGCAGGCTTCGTGTGAATCATTTTCCTGTCACATTCAATCCACAAAGCATAATCATGCATTATGATGTCGATGTTAAGGCCATGGTTCCTCCGAAAAACGGTCGTCCAAAGAAGATTTCGAAGTTTGATCTGTCCCTGATTAGGGACAAGTTGTTTTCCGATCATCCAGACAGGTTGCCTTCGTTGAAAACTGCTTATGATGGTGAAAAGAACATCTTCAGTGCGGTGCCATTGCCGGAAGAAACCTTCACTGTGGATGTTTCCAAAGGAGAGGATGAAAGGGTGGTTTCATATGCCGTTACTCTTACACTGGTTAATAAGCTTGAGCTGAGAAAGTTAAAGGATTATCTGAGTGGCAAAGTGCTATCCATTCCGAGGGATATTCTACAGGGGATGGATTTGGTGGTGAAGGAGAATCCGGCTAAACGCACCGTTTCTCTTGGGAGATGCTTCTTTCCCATGAATCCTCCTTCAGTTGAGAGGGACCTTCAACCTGGGATAATTGCAATTGGAGGGTTTCAGCAGAGTCTTAAGACCACTTCTGAGGGTCTAGCTTTGTGCCTTGACTATTCGGTTTTGTCTTTCAGAAAGAAAATGTCAGTATTGGATTTCCTTCATGACCATATCCGGGGTTTCAATTTGGGTGAGTTTGGGAAATTCAAGCAAAATGTTGAGGAGGCACTTATTGGGTTGAAAGTAAATGTCACCCACAGGAGAACAAAACAGAAATACACTGTTGCCAGGTTGACAACTAAGGATACAAGACATATCACTTTCCCCATGTTGGACCCTGAAGGCCAAAATCCCCCTACGAGCATCAGTCTTCTTGCTTACTTTAAAGATAAATATGGGGTGGACATTGAATACAAAGACATTCCTGCCTTGGATTTTGGTGGCAACAAGACGAATTATGTGCCTATGGAGTTGTGTGTTTTGGTTGAGGGTCAGAGATACCCCAAAGAAGATTTGGACAAGAATGCTTCCAAGGCGTTGAAAGATATGTCATTGGCTCGTCCAAGGGACAGGGAATCCATTATACAGATGATGGTGAAGTCAGGCGATGGACCAAACGGTGGTGGGATTCTTCAAAATTTTGGAATGAGTATCAACACTTCAATGACAAATGTGACAGGACGTGTAATTGGGCCCCCACAATTGAAGTTAGGTAATCCAAATGGTGAGATTATTAGTATGACACTGGATCCAGAGAAATGTCAATGGAATCTAGTTGGAAAATCAATGGTGGAAGGAAAGCCAGTTGAGTGTTGGGGCATTCTTGATTTTACCTGTAAAGGGCCTAATTGGTCCAAATTAAGAGACAATCAATTTGTTCCAAGGCTTATGGATAAGTACAGAAAATTGGGCATTGACATGAGGGAGCCAGTTTGGTATGAACAATCTGCAATGTGGCAACTTGGGAATTATAATTCACTCTGTGGATTACTTGGAAAAATCAACGATAACGTTCAAAAAAGATGTCGACGACAGCTGCAATTTCTTCTTTGTGTGATGACCAACAAAGATCCAGGTTACAAGAGCCTTAAGTGGATTGCTGAGACCAAGGTTGGCATAGTGACACAATGCTGCTTATCTGGTAATGCTAATGAAGGGAAAGACCAATATCTCACAAATCTTGCTCTCAAGATCAATGCAAAAATTGGAGGCAGTAATGTGGAGCTCAGTAATAGGCTCCCTCACTTTGAGGGTGAAGGTCATGTTATGTTCATAGGGGCTGATGTCAATCATCCAGCTTCACGGGACACCGATAGTCCATCAATTGTTGCTGTGGTTGCCACCACCAACTGGCCTGCTGCAAGTCGCTATGCAGCACGTGTTTGTGCTCAAAACCATCGAAAAGAGAAAATTTTGAATTTTGGAGAAGTTTGCCTTGATCTTGTGACATATTATGAAAGGTTGAACAAGATCAGGCCTGAAAAAATTGTTATCTTTCGTGATGGTGTAAGTGAGAGCCAATTTCACATGGTTCTTGCTGAGGAGCTGCAAGATTTGAAGACAGTATTTCATCGCTCAAATTACTTCCCAACCATCACTCTTATTGTGGCTCAAAAGCGACATCAGACTCGATTGTTTCCTGCAGGTGCGAGGGAGGGGACTCCTAGTGGCAATGTGTTCCCTGGAACAGTTGTGGACACAAAGGTTGTACATCCTTTTGAATTTGACTTTTACCTTTGTAGCCACTATGGAAGCCTAGGTACTAGCAAGCCAACTCACTATTATGTCTTGTGGGATGAGCACAAGTTTACTTCTGATGATTTGCAGAAACTCATATATGATATGTGCTTTACCTTTGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCTTATAGAGGACGACTATATTATGAAGCGACGATTGGGGTGCAATCTCCGGCGTCATCTGCATCTTCTTCATCACGTTCTTCAACAGTGTCAAATTTCAATGATCCAGGGTCTTACAAGTTGCATCCTAATATGGAAAACATGATGTTCTTTGTCTGA 3030 0.4419 MERGGYRGGGRRGGGGGRRGGGAGGRGFPPQSQQHQWQRTNPASSSYAQTRSPSGSSNPPPTSEPYHTPQSQQHQWQRTNPSSSSYAQTRSPSGSSSNPPHAQTRSPSGSSSNPPPPPSSSSKPYHHTPPQTLTHPDVGALKISDQTTLENITPVHRPDQGGTLAIRKCRLRVNHFPVTFNPQSIIMHYDVDVKAMVPPKNGRPKKISKFDLSLIRDKLFSDHPDRLPSLKTAYDGEKNIFSAVPLPEETFTVDVSKGEDERVVSYAVTLTLVNKLELRKLKDYLSGKVLSIPRDILQGMDLVVKENPAKRTVSLGRCFFPMNPPSVERDLQPGIIAIGGFQQSLKTTSEGLALCLDYSVLSFRKKMSVLDFLHDHIRGFNLGEFGKFKQNVEEALIGLKVNVTHRRTKQKYTVARLTTKDTRHITFPMLDPEGQNPPTSISLLAYFKDKYGVDIEYKDIPALDFGGNKTNYVPMELCVLVEGQRYPKEDLDKNASKALKDMSLARPRDRESIIQMMVKSGDGPNGGGILQNFGMSINTSMTNVTGRVIGPPQLKLGNPNGEIISMTLDPEKCQWNLVGKSMVEGKPVECWGILDFTCKGPNWSKLRDNQFVPRLMDKYRKLGIDMREPVWYEQSAMWQLGNYNSLCGLLGKINDNVQKRCRRQLQFLLCVMTNKDPGYKSLKWIAETKVGIVTQCCLSGNANEGKDQYLTNLALKINAKIGGSNVELSNRLPHFEGEGHVMFIGADVNHPASRDTDSPSIVAVVATTNWPAASRYAARVCAQNHRKEKILNFGEVCLDLVTYYERLNKIRPEKIVIFRDGVSESQFHMVLAEELQDLKTVFHRSNYFPTITLIVAQKRHQTRLFPAGAREGTPSGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYYVLWDEHKFTSDDLQKLIYDMCFTFARCTKPVSLVPPVYYADLAAYRGRLYYEATIGVQSPASSASSSSRSSTVSNFNDPGSYKLHPNMENMMFFV* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02453 1009 Gene3D - 548 730 - -
Rops2g02453 1009 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 167 968 - -
Rops2g02453 1009 MobiDBLite consensus disorder prediction 67 109 - -
Rops2g02453 1009 SUPERFAMILY PAZ domain 363 519 IPR036085 GO:0005515
Rops2g02453 1009 Pfam N-terminal domain of argonaute 167 303 IPR032474 -
Rops2g02453 1009 SMART Piwi_a_2 667 966 IPR003165 GO:0003676
Rops2g02453 1009 SMART PAZ_2_a_3 367 514 IPR003100 GO:0005515
Rops2g02453 1009 MobiDBLite consensus disorder prediction 1 137 - -
Rops2g02453 1009 CDD PAZ_argonaute_like 367 481 - -
Rops2g02453 1009 MobiDBLite consensus disorder prediction 110 124 - -
Rops2g02453 1009 MobiDBLite consensus disorder prediction 29 57 - -
Rops2g02453 1009 Pfam Piwi domain 668 965 IPR003165 GO:0003676
Rops2g02453 1009 ProSiteProfiles Piwi domain profile. 667 966 IPR003165 GO:0003676
Rops2g02453 1009 Gene3D paz domain 362 486 - -
Rops2g02453 1009 SMART DUF1785_2 313 366 IPR014811 -
Rops2g02453 1009 SUPERFAMILY Ribonuclease H-like 652 966 IPR012337 -
Rops2g02453 1009 CDD Piwi_ago-like 529 965 IPR045246 -
Rops2g02453 1009 Gene3D - 737 1009 IPR036397 GO:0003676
Rops2g02453 1009 Pfam PAZ domain 387 495 IPR003100 GO:0005515
Rops2g02453 1009 Pfam Argonaute linker 1 domain 315 365 IPR014811 -
Rops2g02453 1009 ProSiteProfiles PAZ domain profile. 392 482 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02453 Rops-Chr2 39887246 39891398 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02453 162 1008 Eukaryotic Initiation Factors Gene Family AT5G43810 35.248 1.78e-151 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02453 K11593 - gmx:100805250 1393.64