Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02452 ATGGAAAGAGGCGGTTATAGAAACACTGGAAGAGTAAGCAGAGGAAGTGGTGGTGGCCATGGCGGCGGAGGTTTTCCTCCTCGATGGCAACAACAACAACGATGGCAAAGGACAAACACCTCTTCCTCCTCTCAAACTCAAAGTCCAAGTGGAACTTCAAATCCTTCTCAAACCTCCAAAACTAATCACACTCTTCCTCAAACCCAAACACATCCAGATAATGGAAAGTTGAAAATATTAGAGCAAACAGTGGAAAATATTACACCTATACACAGGCCTGACAAGGGAGGAACAGTAGCAATTCGACAGTGCAAATTGCTAGTGAATCATTTTCCGGTTAAGTTCAATCCACAAAGTATAATCATGCATTACAACGTGGATGTTAAGGCCATGTTGCCACCGAAAAACGGAAAAACTCTGAAGATTTTGAAGTCTGACCTGTCCATGATTAGGGACAAGTTGTTTTCCGATCATCCAGAGAGGTTGCCTTCATTGAAGACTGCTTATGACGGCGAAAAGAACATCTTCAGTGCGGTGACATTGCCGGAAGAAACCTTCACTGTGGATGTTTCCAAAGGAGAGGATGAAAAGGTGGTTTCATATGCTGTTACTCTTACATTGGTTAATAAGCTTGAGCTTCGAAAGTTAAAGGATTATCTCAGTGGCAATGTGCTATCCATTCCGAGAGATATTCTACAGGGGATGGATTTGGTGGTGAAGGAGAATCCGGCTAAACGCACCGTTTCTCTTGGCAGATGCTTCTTTCCCACAAATCCTCCTTTGGTAGAGAGGGACCTTCAGCCTGGGATAATTGCAATTGGAGGGTTTCAGCACAGTCTCAAGACCACATCCCAGGGTTTATCCTTGAGCCTTGACTATCAGGTTTTGTCATTTCTAAAGAAAATGTCAGTATTGGATTTCCTTCATGCTCATATTAATGGTTTCAATTTGGGTGAGTTTTGGAAATATAAGCAATATGTTGAGGAGGCACTTACTGGGTTAAGAGTAAATGTTACCCATAGGAGAACCAAACAGAAATACACTATTGCTGGGTTAACAGCTAAGGTTACACGGCATATCACTTTCTCTATTTTGGACCCCGAGCGTAAAAATCCTCCTAAGAGCACCTATCTTGTTGCATACTTTAAAGAAAAATATGGCCTGGATATTGAATACAAAGATATTCCTGCCTTGGATTTTGGAGGTGACAAGATGAATTATGTACCTATGGAGTTATGCGTCTTGGTTGAGGGTCAGAGATACCCCAGAGAGTATTTGGACAAGAGTGCTGCCAGGGAACTCAAAAAAATGTCATTGGCTCATCCAAGGGAGAGGAAATCTATGATACAGACAATGGTAAAGTCAAGTGATGGACCAAATGGCGGTGGTATTCTTCAGAATTTTGGAATGAAAATCAACCCTTCCATGACAAATGTGACAGGACGTGTAATTGCGCCCCCACAACTGAAGTTAGGTGATCCAAATGGCGGGATTATTAGTATAACACTGGATCCAGAGAAATGTGATTGGAATCTAGTTGACAAATCTATGGTGGAAGGCAAGCCAGTTGAGTGTTGGGGCATTCTTGATTTTACCAGTAAAGGGCCCAATCGGTGCAAATTAAGAGGATATCTGTTCATTCAAAAGTTTATGGATAAATACAAAAAATTGGGCATTGACATGAAGGAGCCAATTTGGTATGAACAGTCTGCAATGTGGCAACTTGGGAATTATAATTCACTATGTGGATTACTTGAAAAAATTAATGATAACGTTCAAAAAAGATGTAGACGACGGCTGCAATTTCTTCTGTGTGTGATGGCCAACAAAGATCAAGGTTACAAGTGCCTCAAGTGGATTGCTGAGACCAAGGTTGGCATTGTGACACAATGTTGCTTATCTGGTAATGCTAATGAAGCAACAGACCAATATCTCACAAATCTTGCTCTCAAGATCAATGCAAAACTAGGAGGTAGTAATGTGGAGCTCATTAATAGGCTCCCTCACTTTGAGGGTGAAGGTCATGTTATGTTCATAGGGGCTGATGTCAATCATCCAGGTTCGCGGGACACCAATAGTCCATCAATTGCTGCTGTGGTTGCCACCATTAACTGGCCAGCTGCAAATCGCTATGCAGCACGTGTTTGCGCTCAAGACCATCGCACAGAGAGAATTTTGAATTTTGGAGAAATTTGCCTTGATCTTGTGACATGTTATGATAGGTTGAACAAAGTCAAGCCTGAAAAAATTGTTATCTTTCGTGATGGTGTAAGTGAGAGTCAATTTAACATGGTTCTTACTGAGGAGCTACAAGATTTGAAGACAGTATTTCATCACTTGAATTACTTCCCAACCATCACTCTTATTGTAGCTCAAAAGCGACATCAGACTCGATTGTTTCCTGTAGGTGCAAAGGAGGGGATTCGTAGTGGCAATGTGTTCCCTGGAACAGTTGTGGACACAAAGGTTGTACACCCTTTTGAATTTGACTTTTACCTTTGTAGCCACTATGGAAGTCTAGGTACTAGCAAGCCAACTCACTATCATGTCTTGTGGGATGAGCACAAGTTTACTTCTGATGATTTGCAGAAACTGATATATGATACGTGCTTTACCTATGCAAGGTGCACTAAACCTGTATCTTTAGTCCCTCCAGTGTACTATGCTGACCTTGCTGCATATAGAGGACGACTATACTATGAAGCAAGGATTTGGGCACAATCTCCGGATTCATCTGCATCTTCTTCTTCATCACCCATAGCTTCTTCGTCACTTTCTTCAACTGCCTCAAATTCAAATGATCCTGGGTTTTACAAGTTGCATCCTGATATGGAAAACATAATGTTCTTCATCTGA 2856 0.4163 MERGGYRNTGRVSRGSGGGHGGGGFPPRWQQQQRWQRTNTSSSSQTQSPSGTSNPSQTSKTNHTLPQTQTHPDNGKLKILEQTVENITPIHRPDKGGTVAIRQCKLLVNHFPVKFNPQSIIMHYNVDVKAMLPPKNGKTLKILKSDLSMIRDKLFSDHPERLPSLKTAYDGEKNIFSAVTLPEETFTVDVSKGEDEKVVSYAVTLTLVNKLELRKLKDYLSGNVLSIPRDILQGMDLVVKENPAKRTVSLGRCFFPTNPPLVERDLQPGIIAIGGFQHSLKTTSQGLSLSLDYQVLSFLKKMSVLDFLHAHINGFNLGEFWKYKQYVEEALTGLRVNVTHRRTKQKYTIAGLTAKVTRHITFSILDPERKNPPKSTYLVAYFKEKYGLDIEYKDIPALDFGGDKMNYVPMELCVLVEGQRYPREYLDKSAARELKKMSLAHPRERKSMIQTMVKSSDGPNGGGILQNFGMKINPSMTNVTGRVIAPPQLKLGDPNGGIISITLDPEKCDWNLVDKSMVEGKPVECWGILDFTSKGPNRCKLRGYLFIQKFMDKYKKLGIDMKEPIWYEQSAMWQLGNYNSLCGLLEKINDNVQKRCRRRLQFLLCVMANKDQGYKCLKWIAETKVGIVTQCCLSGNANEATDQYLTNLALKINAKLGGSNVELINRLPHFEGEGHVMFIGADVNHPGSRDTNSPSIAAVVATINWPAANRYAARVCAQDHRTERILNFGEICLDLVTCYDRLNKVKPEKIVIFRDGVSESQFNMVLTEELQDLKTVFHHLNYFPTITLIVAQKRHQTRLFPVGAKEGIRSGNVFPGTVVDTKVVHPFEFDFYLCSHYGSLGTSKPTHYHVLWDEHKFTSDDLQKLIYDTCFTYARCTKPVSLVPPVYYADLAAYRGRLYYEARIWAQSPDSSASSSSSPIASSSLSSTASNSNDPGFYKLHPDMENIMFFI* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02452 951 Pfam N-terminal domain of argonaute 102 238 IPR032474 -
Rops2g02452 951 Gene3D - 672 951 IPR036397 GO:0003676
Rops2g02452 951 SMART PAZ_2_a_3 302 439 IPR003100 GO:0005515
Rops2g02452 951 CDD PAZ_argonaute_like 302 416 - -
Rops2g02452 951 Pfam Argonaute linker 1 domain 250 298 IPR014811 -
Rops2g02452 951 SMART DUF1785_2 248 301 IPR014811 -
Rops2g02452 951 CDD Piwi_ago-like 464 900 IPR045246 -
Rops2g02452 951 Gene3D - 483 664 - -
Rops2g02452 951 MobiDBLite consensus disorder prediction 1 76 - -
Rops2g02452 951 MobiDBLite consensus disorder prediction 29 76 - -
Rops2g02452 951 SMART Piwi_a_2 602 901 IPR003165 GO:0003676
Rops2g02452 951 Gene3D paz domain 297 421 - -
Rops2g02452 951 Pfam Piwi domain 603 900 IPR003165 GO:0003676
Rops2g02452 951 SUPERFAMILY PAZ domain 298 455 IPR036085 GO:0005515
Rops2g02452 951 SUPERFAMILY Ribonuclease H-like 586 901 IPR012337 -
Rops2g02452 951 ProSiteProfiles Piwi domain profile. 602 901 IPR003165 GO:0003676
Rops2g02452 951 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 102 903 - -
Rops2g02452 951 Pfam Argonaute linker 2 domain 444 490 IPR032472 -
Rops2g02452 951 ProSiteProfiles PAZ domain profile. 326 417 IPR003100 GO:0005515
Rops2g02452 951 Pfam PAZ domain 322 430 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02452 Rops-Chr2 39871848 39875706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02452 35 926 Eukaryotic Initiation Factors Gene Family AT1G48410 34.405 2.34e-148 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02452 K11593 - gmx:100805250 1352.81