Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02450 ATGGAGGATCAGGAAATTTTGGGTGGTGTTGGAAGAGAGGAAGATGAAGATGAGTTTTGCAGTTGTTGTGAAGATGAGGAGGAAGTATGGAAGGAAATTCAGGAGGAAGAATCGAAGGATGACCTTGATGAATTTTCGGTGAAGTTGTTTTTCAAGGGCTTGTCAGTAGCTGGGGTTGAAAATTCTGGTTCTGGGTTTTCTGGAATTGGAGTGTTCATGGAAAGAGCATCTAGTCTTCCTGTTATTAGGGTGCAGAAAAGACTTGATTTTTATGCAGAGGAGCCACTAATTGACTACTTGGCTCTCATGGATGGTTTGCTGGAAGCTTCACAGAACAAGATCCGCAGGGTTTATGCTTTTACAGATTCCGAGTTGTTGTACCATCAGATAATATCTGATGAAAATCTTGAGATGCCACTTTTGATTGCATTGAGAGAAAGGATTCTGGAACATGCCAATAATTTTGAAGCTTTTACTCTGAATCTTGTTCCAAGTATTGATCTTGAGAAGCCCCTGCAATTAGCCAAAGTAGCAATTGGACTAGTCACTTTTCCTGTAAATGGCAAGAGTTTACTTGAGAGCTGTTCTATTTGTTGTGAAGACAAGCCGTTGCCAATTATGATCACCATGAAATGTTTACACAAGTTCTGTTCACATTGCTTGAGGGCCTATGTTGATGGAAAAGTACAATCTTGTCAAGTCCCTGTAAGATGTCCTGAACCAGGATGCAAATATTACATCTCTGCCACTGAGTGCAGGTCTTTCCTACCATTCACTTCCTTTGAATCTTTGGAGAAAGCCCTTGCAGAAGCAAATTTCCTCCATTCAGATAGAATTTACTGTCCATTTCCAAATTGTTCTGTTCTCCTTGCTCCCCATCAATGCTTGTCAGCCAGGGCTAGTTCATCTAGTCAGTCAGACAGTTCTTGTGTTGACTGTCCTGTTTGTCAGAGGTTTATCTGTGTGGACTGTAAGGTTCCATGGCATTCTTCCATGAGCTGTGAAGAATTTCAGAATCTTCCTGAGGAAGAGAGAGATGCTTCTGACATTACTTTGCATCACCTTGCTCAGAATAAAAGGTGGAAGCGTTGTCAGCAATGTCGTCGGATGATTGAACTTACTCATGGTTGTTACCACATGACATGCTGGTGCGGTCATGAGTTTTGTTATTCATGTGGTGCGGAGTACAGGGGTGGTCAACAGACATGTCAGTGTGCATTTTGGGATGAAAACCACTCTGAAGACTCAGTGTCACACTGTCTCCAAGAATCAGAACAATGGGCATGGGACACTTTCAGTTCTCTCCCCATGATCATGGATGCATACTCTGACCAAGAAAGTTCACAGCTTGCACTTATACAGAGATTTCTAGCTGAGGGTTTAAGTCTGAGTGACCATCATCCTTACCAATCTCCTCCCCCTTGTACAGACTCCTATATGGATGCAATGAAGGATCTACATCAGCAGCTTCCATGGCTCGAGAGATTTGTGTCTGTTGTAAGTGATGACTATGAAGATTATAGTCAATAA 1530 0.4222 MEDQEILGGVGREEDEDEFCSCCEDEEEVWKEIQEEESKDDLDEFSVKLFFKGLSVAGVENSGSGFSGIGVFMERASSLPVIRVQKRLDFYAEEPLIDYLALMDGLLEASQNKIRRVYAFTDSELLYHQIISDENLEMPLLIALRERILEHANNFEAFTLNLVPSIDLEKPLQLAKVAIGLVTFPVNGKSLLESCSICCEDKPLPIMITMKCLHKFCSHCLRAYVDGKVQSCQVPVRCPEPGCKYYISATECRSFLPFTSFESLEKALAEANFLHSDRIYCPFPNCSVLLAPHQCLSARASSSSQSDSSCVDCPVCQRFICVDCKVPWHSSMSCEEFQNLPEEERDASDITLHHLAQNKRWKRCQQCRRMIELTHGCYHMTCWCGHEFCYSCGAEYRGGQQTCQCAFWDENHSEDSVSHCLQESEQWAWDTFSSLPMIMDAYSDQESSQLALIQRFLAEGLSLSDHHPYQSPPPCTDSYMDAMKDLHQQLPWLERFVSVVSDDYEDYSQ* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02450 509 SMART ibrneu5 262 334 IPR002867 GO:0008270
Rops2g02450 509 SMART ibrneu5 344 403 IPR002867 GO:0008270
Rops2g02450 509 SUPERFAMILY RING/U-box 347 411 - -
Rops2g02450 509 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 275 IPR013083 -
Rops2g02450 509 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 110 457 IPR031127 GO:0004842|GO:0016567
Rops2g02450 509 SUPERFAMILY RING/U-box 193 269 - -
Rops2g02450 509 FunFam RBR-type E3 ubiquitin transferase 332 457 - -
Rops2g02450 509 Pfam IBR domain, a half RING-finger domain 355 403 IPR002867 GO:0008270
Rops2g02450 509 Pfam IBR domain, a half RING-finger domain 275 334 IPR002867 GO:0008270
Rops2g02450 509 Gene3D - 50 181 IPR036397 GO:0003676
Rops2g02450 509 ProSiteProfiles Zinc finger RING-type profile. 195 239 IPR001841 -
Rops2g02450 509 ProSiteProfiles TRIAD supradomain profile. 191 409 IPR044066 -
Rops2g02450 509 ProSitePatterns Zinc finger RING-type signature. 212 221 IPR017907 -
Rops2g02450 509 CDD BRcat_RBR_unk 276 337 - -
Rops2g02450 509 FunFam RBR-type E3 ubiquitin transferase 190 275 - -
Rops2g02450 509 Gene3D - 331 457 - -
Rops2g02450 509 Pfam Reverse transcriptase-like 61 164 IPR002156 GO:0003676|GO:0004523
Rops2g02450 509 FunFam RBR-type E3 ubiquitin transferase 47 182 - -
Rops2g02450 509 CDD Rcat_RBR_unk 360 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02450 Rops-Chr2 39800929 39805271 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02450 46 394 C3H Transcription Factor Family AT2G19610 25.562 4.22e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02450 - - gmx:100783040 820.846