LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g02401	ATGGCAGGGGAGGTAGTGAATTTAAAGGCCACAACGATGAAGATTGCGGCTCCGACGAGGGTTTTGAGGTGGTGGAGAATGTGGGAGTTGGATGATGAGTGGGCCTTGACAGTGGTGAAGCAAGGGGTGGGGCGGTGGCGAAGTGGGAAGAGAGGGAGATTGGGTTTGGGGGGAGATGGTGTGGTTGTGGAGGTGGAATTGAAGGAGAGCATGGAGGATGAGGCAGTGGTGGGAGGCAGCCATGGAAGCCACCGCGACATCTTGCGGTGTGTGACTCGGCCACCGCGGCTTCTCCGTCAGCGACGAAGGCGTCTCGGGAGAAATGACGACAATAGCGCGGCGCATCTCCTCCAGATCGATGACTACGGCGCAACACATCTCCTCTCTAGATCTATGACAGCGGCACATCTCACCTCACCTCACTTCCATTCCTTTCCCTGTTCTTCCGGTGGTAAGCTGGTTGTCATCCCTCTCCAGATCTACGACACGACGCATCTCCTCCAGATCGACGACTGTACCGCTATCTTGCTTGAACAGTATTCAGAGAGTAGAAGCATGGGGCGTGTGAGAACCAAGACAGTGAAGAAGTCCTCACGGCAAGTGATAGAGAGGTACTACTCTCGAATGACACTAGACTTCCACACGAACAAGAAGGTTCTAGAAGAAGTAGCATTGATTCCTTCCAAGAGGCTCCGAAACAAGATCGCTGGATTCTCCACTCACCTCATGAAACGCATTCAGAAGGGGCCAGTTCGTGGAATCTCCCTCAAACTCCAAGAAGAGGAGCGTGAACGTCGCATGGACTTCGTTCCTGACGTTTCTGCCATTAACACCGATAACATTCAGGTCGACAAGGAAACCCTTGACATGCTCCATGCCCTTGGCCTCAACGATATCCCTGGCATCACACAGGTTGACCCTGTTCCAGTTCCCTTTCTTCCTCCGAGGAGGTATTAG	957	0.5329	MAGEVVNLKATTMKIAAPTRVLRWWRMWELDDEWALTVVKQGVGRWRSGKRGRLGLGGDGVVVEVELKESMEDEAVVGGSHGSHRDILRCVTRPPRLLRQRRRRLGRNDDNSAAHLLQIDDYGATHLLSRSMTAAHLTSPHFHSFPCSSGGKLVVIPLQIYDTTHLLQIDDCTAILLEQYSESRSMGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKVLEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAINTDNIQVDKETLDMLHALGLNDIPGITQVDPVPVPFLPPRRY*	319

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g02401	318	Pfam	Ribosomal S17	186	305	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Rops2g02401	318	Gene3D	-	186	247	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Rops2g02401	318	FunFam	40S ribosomal protein S17	186	247	-	-
	Rops2g02401	318	SUPERFAMILY	Rps17e-like	186	247	IPR036401	GO:0003735\|GO:0005840\|GO:0006412
	Rops2g02401	318	ProSitePatterns	Ribosomal protein S17e signature.	226	241	IPR018273	GO:0003735\|GO:0005840\|GO:0006412
	Rops2g02401	318	PANTHER	40S RIBOSOMAL PROTEIN S17	186	306	IPR001210	GO:0003735\|GO:0005840\|GO:0006412
	Rops2g02401	318	Hamap	30S ribosomal protein S17e [rps17e].	186	248	IPR001210	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g02401	Rops-Chr2	38745136	38751782	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g02401	186	318	Cytoplasmic Ribosomal Protein Gene Family	AT2G04390	79.433	1.22e-74	224

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g02401	K02962		-	gmx:100527036	240.736