Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02399 ATGTTATCTGATTCTAACCTCAACATGTCTGATTCATTCAGTAGCTTTCTCTCTGCCACTCCAAATTCCGCCCATAATTCCCATGCAGCTCCCAAAATTACTACAACAATCTCCTCAATAGCCCAACCTTGTTGTATTTGCACCCATTGCAACCATCTCCTCACCTTCAATCACCACGTTGGTCATGTAGCAGAGGCAGGGACAAACAATAAAGGGGGGACTCAACAAAGCTCAAGGTGGAGTCCAACACCAGTTCAGTTGCTAGTCCTTGAGGAATTGTATAGGCAAGGAACGAAGACACCCTCAGCTGAACAAATTCAACAAATAACTTCACAGCTGAGCCAGTTTGGGAAGATTGAAGGGAAGAACGTGTTCTATTGGTTCCAGAATCACAAGGCAAGAGAGCGTCAAAAACGTCGTCGCCGTGAGATGGAGGAAACTGCTTCTCCTACTACTCAAGGGTTGAAAGAGACAGGTTGTGGAGTTAAAGAGACAAAGAAGTGGGCATCCACTTTAAACTGCAGTGGACATGCAGAGGAATCTGCAGCACTGGATATGGCAGAAAAAGGATCTACTGAGTGGGCTCAATTTGAGGAGAGAGGCATACAAGTTTTGAGGAGAAGCATAGCAGAAAGGCAAGCTAAGTGCCAAAATATGGAAATGCCTTGCTTCCCTCCCATTACTTTGGCAGCTACAACTTCAGTATCAGCACACAGAACACGTATCAACTCGCAACTTTTCACCCCTCAAAATTATAATTTACCATCTGTATTCAACAGAGAAAGTTTCAACTACTATAATGAAGAAAATGCAGATCCTAGGACCCTCGACCTTTTTCCACTTAAGAGGGATGACCAAGATGGCATTTGTCTAGCTGAGAGAAAATCCATGTTCTGTGCCAATGCTTCAATGGACAATGAAATCAACTCCAACCAGTTTTTTGAGTTTCTTCCTTTAAGAAACTGA 966 0.4337 MLSDSNLNMSDSFSSFLSATPNSAHNSHAAPKITTTISSIAQPCCICTHCNHLLTFNHHVGHVAEAGTNNKGGTQQSSRWSPTPVQLLVLEELYRQGTKTPSAEQIQQITSQLSQFGKIEGKNVFYWFQNHKARERQKRRRREMEETASPTTQGLKETGCGVKETKKWASTLNCSGHAEESAALDMAEKGSTEWAQFEERGIQVLRRSIAERQAKCQNMEMPCFPPITLAATTSVSAHRTRINSQLFTPQNYNLPSVFNRESFNYYNEENADPRTLDLFPLKRDDQDGICLAERKSMFCANASMDNEINSNQFFEFLPLRN* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02399 321 CDD homeodomain 79 133 IPR001356 GO:0003677
Rops2g02399 321 Gene3D - 62 151 - -
Rops2g02399 321 Pfam Homeodomain 77 137 IPR001356 GO:0003677
Rops2g02399 321 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 66 315 IPR044555 GO:0003700|GO:0099402
Rops2g02399 321 MobiDBLite consensus disorder prediction 136 157 - -
Rops2g02399 321 FunFam WUSCHEL-related homeobox 4 77 144 - -
Rops2g02399 321 ProSiteProfiles 'Homeobox' domain profile. 73 138 IPR001356 GO:0003677
Rops2g02399 321 SMART HOX_1 75 142 IPR001356 GO:0003677
Rops2g02399 321 SUPERFAMILY Homeodomain-like 74 140 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02399 Rops-Chr2 38704474 38706517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02399 77 321 Wox Gene Family AT3G18010 34.948 4.69e-38 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops2g02399 Homeodomain 1.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02399 - - gmx:100788830 452.595