Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02393 ATGTCAAGAGAGCAAGAGTCGCTGCACCGGTGCCTGAGTGTAATGAAAAATAAGCAAGGGTTCTCATATAGTAGTGAACGGATAGTCTTCACCCTTTGTCCCTTCGAAATTTCCTTCAACAATCTCAGACCCCACACCTTGGTTTATCAACAACCCCTTCTGAGTGAAATGGAAATCACTAGCAGCCATAACAGCAGTAGTAGCATGATGTGGTTTTTCAAGGATAGAGGGTTTGATGATAACAGCATACAAGGAATGTTCACAAAATGCAAGCGCCTTGAGATTGTGCATAAGGAAAGAGCAAATGAGAATTGGGAGTATTTAAGAAGCATTGGAATTCAAGAAAGGAAATTACCCTCAATTGTTTCAAAATGCCCCAAGATTCTTGCACTTGGTCTTAATGAGAAGATTGTGCCCATGGTTGAGTGTCTCAAGACACTAGGAACTAAACCTCATGAAGTTGCTTCTGCCATAACCAAGTTCCCTCACATACTCTCACATAGTGTTGAAGAAAAGCTTTGTCCCCTTTTGGCCTTCTTTCAGGCATTGGGCATACCCGAAAAGCAAATTGGGAAAATCATATTGCTAAACCCTAGGCTTATCAGCTACAGCATTGAAACAAAGATGGCAGAAATTGTAGACTTCCTTGGAAGCCTTGGTCTCAATAAAGATGGAATGATTGGAAAAGTTATAGTCAGGGATCCATATATTATGGGTTATAGTGTTGATAAAAGGCTCCGCCCAACTTCGCAGTTTCTGAAGTCAATAGGTCTGACTGAGCAGGGTCTTCAAGTGGTGGCTGTGAACTTCCCATCAATTTTGAGCAGGGATGTGAACAAGGTTTTGGTACCCAATTATGCTTATTTGAAGAAATGTGGGTTTCAGGACAGACAGATAGTTGATTTAGTTGTTGGTTTTCCTCCTATCCTGATAAAGAGCATTCAGAATTCTTTGGAACCGAGGATCAAGTTTTTGGTAGATGTAATGGGGAGACAAGTTGATGAAGCCGCCGATTACCCTTGCTTCTTTCGGCACGGCCTGAAGAGACGATTAGAGTTGCGGCACAAACTTCTAAAGCAGAGGAATTTAAATTGTAGCTTGAGTGAAATGCTGGACTGTAATCAGAAGAAGTTCCTCATGAAGTTCGGCTTGTTAGAAGGATATGCCTTGAGTAACTAG 1179 0.4165 MSREQESLHRCLSVMKNKQGFSYSSERIVFTLCPFEISFNNLRPHTLVYQQPLLSEMEITSSHNSSSSMMWFFKDRGFDDNSIQGMFTKCKRLEIVHKERANENWEYLRSIGIQERKLPSIVSKCPKILALGLNEKIVPMVECLKTLGTKPHEVASAITKFPHILSHSVEEKLCPLLAFFQALGIPEKQIGKIILLNPRLISYSIETKMAEIVDFLGSLGLNKDGMIGKVIVRDPYIMGYSVDKRLRPTSQFLKSIGLTEQGLQVVAVNFPSILSRDVNKVLVPNYAYLKKCGFQDRQIVDLVVGFPPILIKSIQNSLEPRIKFLVDVMGRQVDEAADYPCFFRHGLKRRLELRHKLLKQRNLNCSLSEMLDCNQKKFLMKFGLLEGYALSN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02393 392 Pfam mTERF 154 379 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 Pfam mTERF 61 180 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 SMART mt_12 119 150 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 SMART mt_12 228 259 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 SMART mt_12 191 222 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 SMART mt_12 264 295 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 SMART mt_12 333 364 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 SMART mt_12 300 332 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 SMART mt_12 155 186 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 Gene3D Transcription termination factor 3, mitochondrial 161 386 IPR038538 -
Rops2g02393 392 PANTHER CGI-12 PROTEIN-RELATED 189 310 IPR003690 GO:0003690|GO:0006355
Rops2g02393 392 FunFam transcription termination factor MTERF6, chloroplastic/mitochondrial 154 386 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops2g02393 mTERF 4e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02393 K15032 - gmx:100816929 565.074