Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02384 ATGGCGGTTTTACCTACAAGCTCCTCCAGCTTGGAATTGACTATATCTGTTCCTGGCTTTGCTTCTTCACCAACCCTTCTTCCTTCTTCATCTGTGAAAGAGTTGGACATAAACCAAGCACCCTTAGAAGAAGAATGGATGACATCAAACATGGAAGATGAAGAAGAAAGCAGCAATGGAGACCCTCCTCGCAAAAAACTTCGTCTCACAAAGGAACAATCTCGTCTCCTTGAAGAAAGCTTTAGACAAAACCACACTTTAAACCCAAAGCAAAAAGAGACTTTGGCAATGCAGCTGAAGCTTCGACCAAGGCAAGTGGAGGTGTGGTTTCAGAACCGTAGGGCCAGGAGCAAGCTGAAGCAAACGGAGATGGAGTGTGAGTACCTGAAGAGATGGTTTGGGTCACTGACAGAACAGAACCGAAGGTTACGAAGGGAAGTGGAAGAACTTAGAGCTATGAAAGTGGGTCCCCCAACTGTTATATCCCCTCACAGTTGTGAACCACTCCCAGCATCATCCCTAACAATGTGTCCACGCTGTGAACGTGTCACCACCGCCGCCGCAAGCAGCGTAGACAAAGCAGCAGCCACCGCTGCCGCCAGTTTGTCGCCTAAAGTGGTGACGCCTGCCCTTCAATCTCGTCAACCTTCTGCGGCTTGTTGA 663 0.4887 MAVLPTSSSSLELTISVPGFASSPTLLPSSSVKELDINQAPLEEEWMTSNMEDEEESSNGDPPRKKLRLTKEQSRLLEESFRQNHTLNPKQKETLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLRREVEELRAMKVGPPTVISPHSCEPLPASSLTMCPRCERVTTAAASSVDKAAATAAASLSPKVVTPALQSRQPSAAC* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02384 220 Coils Coil 133 153 - -
Rops2g02384 220 FunFam Homeobox-leucine zipper protein 18 48 125 - -
Rops2g02384 220 Pfam Homeodomain 64 118 IPR001356 GO:0003677
Rops2g02384 220 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677
Rops2g02384 220 CDD homeodomain 63 121 IPR001356 GO:0003677
Rops2g02384 220 Gene3D - 56 128 - -
Rops2g02384 220 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 32 201 - -
Rops2g02384 220 SUPERFAMILY Homeodomain-like 49 121 IPR009057 -
Rops2g02384 220 Pfam Homeobox associated leucine zipper 120 154 IPR003106 GO:0006355|GO:0043565
Rops2g02384 220 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981|GO:0006355
Rops2g02384 220 SMART halz 120 163 IPR003106 GO:0006355|GO:0043565
Rops2g02384 220 MobiDBLite consensus disorder prediction 43 66 - -
Rops2g02384 220 SMART HOX_1 62 124 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02384 Rops-Chr2 38429849 38433813 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02384 32 202 Homeobox Transcription Factor Family AT1G70920 60.795 2.59e-62 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Rops2g02384 Homeodomain 3.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02384 K09338 - gmx:100778684 367.081