Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02371 ATGGCCGGCGAGTTCGCCGGAGACCACATGCCGGAGCTTCTCTGTCTTGTTCATGATATCGCCGGAATGTGCGCCGGAGTTGGAGGTGGTGGTTCATCCTCCGCCTCCGCCGCCATGTTTAGGAAGGATTGCACCGATCTGGTTCGCCGGATCTCACTCCTCACTCACTTGTTCGAGGAGATTAAGGAACTGAACAAGGTTTCAGGTTCTGCTTCGAGTTCTTCTTCGGCAACTGTTTCTGATTCAGCGGCTTCGTGGTCTTCTGATCTGGTTCTTGCTCTTCAATCCGCGAAGCGTTTGCTCTCTGTTGCTAGAAACTTTCGTTCTAATTGTTCTTCTGATGGAGCTGCCAAGACCATTGTATACCAATTTCAGTGTGTGACATGGAAATTGGAAAAATTATTAAGCAACTTACCATATAATGATTTGGATATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGGACACAATTGAGACGAGCCACAGAAAAATATGGATATATGATTTCAAAGATGCCATCTCATGAATTATCCCAGCCCCTGGCTCAAGAGATTAGTCAGGTTCTTGGCAAACCTGTGAATGGATTGCATAAACAAAATAGCTGTCCTGAATATTTATCAGAACTAAACAGCATTTCAACAAACATTGGAGGGAAAAGTTGCAGCGCATATGGGGCAGGATCTCGTTTGGAAAGAACAAGGAGCATCCCTTTCTCTTCTGAGGTTTCTTTATTGAATGTAACTGATCCTGAAATTCAGGAAATTTCTGAGAGAAAGAGTCTACCTGAAGTTAAAAATCCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTGATGAGGGATCCTGTTATTGTGGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATTGATTGTGGAAACACAACGTGTCCAAAAACTCAGCAGAAGCTCCAACACTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTACTCAGTGGTGTATAGAGCACAATATTGAGCAGCCAACAGGACTAACGAACGGCAAAATAAAAAAGAGTGATGGATCGTTCAGAGATGTTACAGGTGACATAGCAGCAATAGAAGCTCTGGTACGGAAACTCTCCAGCCAGTCCATTGAGGAGCGTAGAGCAGCTGTTACTGAAATTCGATCCCTATCCAAACGGAGCACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTTTAGTCAACCTTTTAACATCAGAAGATATATTGACACAAGACAATGCAGTTACTGCAATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCGAGAGAAAATGCAGCAGCGACCCTCTTTAGCTTGTCACTTGCGGATGAGAACAAAATAATAATTGGTGCCTCAGGTGCTATACCCGCTTTGGTAGAATTGCTCCAAAATGGGAGCCCTAGAGGAAAGAAAGATGCAGCAACAGCATTGTTCAATTTATGCATATATCAAGGGAACAAGGGCAGAGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAAATGCTTACAGATTCTAGCAAATCAATGGTTGATGAAGCCCTAACCATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCCATAGTAAAAGCCAGCACTATACCAGTTTTAATAGATCTTTTGAGGACTGGATTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTACTTGCCTTGTGCAAGAGGGATGCTGATAATCTTGCTTGTATAAGTAGACTCGGTGCTGTCATACCTCTTTCTGAACTTGCTCGAACTGGTACAGAGAGGGCCAAACGGAAGGCTACTTCATTATTGGAGCATCTTCGTGATGGTCTTGAAAACCTGGCACATTCACTTCTTCAACTAGAAATCATCTTTGATCAGTCAGCAAGGAAGGGACTGGATCCAGTCTGTCAAGAAAAGTCATCAATTTGGAAGGTAGACCCAACCCTGAAAGATATTCAGACTACTTGCTTACACGTATCCAATGCTAGATGCTCATGGATTAGGAGAAAAAACAAGCAATGA 2145 0.4326 MAGEFAGDHMPELLCLVHDIAGMCAGVGGGGSSSASAAMFRKDCTDLVRRISLLTHLFEEIKELNKVSGSASSSSSATVSDSAASWSSDLVLALQSAKRLLSVARNFRSNCSSDGAAKTIVYQFQCVTWKLEKLLSNLPYNDLDISEEVKEQVDLVRTQLRRATEKYGYMISKMPSHELSQPLAQEISQVLGKPVNGLHKQNSCPEYLSELNSISTNIGGKSCSAYGAGSRLERTRSIPFSSEVSLLNVTDPEIQEISERKSLPEVKNPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNTTCPKTQQKLQHLTLTPNYVLRSLITQWCIEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVRKLSSQSIEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDILTQDNAVTAILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARTGTERAKRKATSLLEHLRDGLENLAHSLLQLEIIFDQSARKGLDPVCQEKSSIWKVDPTLKDIQTTCLHVSNARCSWIRRKNKQ* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02371 714 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Rops2g02371 714 Gene3D - 552 662 IPR011989 -
Rops2g02371 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 372 414 IPR000225 GO:0005515
Rops2g02371 714 SMART arm_5 485 525 IPR000225 GO:0005515
Rops2g02371 714 SMART arm_5 403 443 IPR000225 GO:0005515
Rops2g02371 714 SMART arm_5 526 566 IPR000225 GO:0005515
Rops2g02371 714 SMART arm_5 567 607 IPR000225 GO:0005515
Rops2g02371 714 SMART arm_5 444 484 IPR000225 GO:0005515
Rops2g02371 714 Pfam U-box domain 274 345 IPR003613 GO:0004842|GO:0016567
Rops2g02371 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 537 579 IPR000225 GO:0005515
Rops2g02371 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 496 538 IPR000225 GO:0005515
Rops2g02371 714 SUPERFAMILY RING/U-box 272 348 - -
Rops2g02371 714 CDD RING-Ubox_PUB 275 327 IPR045210 -
Rops2g02371 714 Gene3D - 357 452 IPR011989 -
Rops2g02371 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 414 456 IPR000225 GO:0005515
Rops2g02371 714 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Rops2g02371 714 Pfam Armadillo/beta-catenin-like repeat 404 442 IPR000225 GO:0005515
Rops2g02371 714 Pfam Armadillo/beta-catenin-like repeat 486 524 IPR000225 GO:0005515
Rops2g02371 714 FunFam RING-type E3 ubiquitin transferase 273 348 - -
Rops2g02371 714 FunFam RING-type E3 ubiquitin transferase 352 552 - -
Rops2g02371 714 SUPERFAMILY ARM repeat 373 659 IPR016024 -
Rops2g02371 714 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 347 IPR013083 -
Rops2g02371 714 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 455 497 IPR000225 GO:0005515
Rops2g02371 714 Coils Coil 146 166 - -
Rops2g02371 714 FunFam RING-type E3 ubiquitin transferase 553 651 - -
Rops2g02371 714 Gene3D - 453 551 IPR011989 -
Rops2g02371 714 PANTHER U BOX DOMAIN-CONTAINING 39 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02371 Rops-Chr2 38042042 38045125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02371 13 648 U-box Gene Family AT1G23030 61.059 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02371 - - gmx:100815448 1071.23