Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02368 ATGAGAAAGCCTTCTTGTGATACCAAAGACACGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAAAAACTCATAGATTATATCAACAAACACGGTGAGGTTTGTTGGCGTACACTCCCTCAAGCTGCAGGTTTACTTCGGTGTGGCAAAAGTTGTAGGCTGAGATGGATAAATTATCTACGGCCAGACCTTAAAAGGGGCAATTTTGCTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCACTACTAGGCAACAGGTGGTCATTAATAGCTGGGAGATTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAACTCTCATTTAAGAAGAAAGCTCATTAGCAAGGGTATTGATCCAAATAATCATCGTTTAAGCCAAAAAGTCTCTCTCCTTCAAAATCCACCCATGTCTGATAGTTCAAAATCTTTTGGCTTGAAAGACATTAGTAAGAACGAGACAAGTAAAACCCATGTTGAGAATTGTGGTGAAGTCTCAGATGCTGCAAGTGGCAAGGATGATGAGTCATATGCCCTGCCAGATTTAAACCTTGATCTCACAATGAACATTCCTTCACCTTCACCTAGTAGTGCTGAAAACAATCTAAAACCAATACATGAATCTAAATCATCAAGGAAACTTCATTTGGCTTCCCCTTCAACACTTCTTCTATTTCAGTAA 687 0.3988 MRKPSCDTKDTNKGAWSKQEDQKLIDYINKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHLRRKLISKGIDPNNHRLSQKVSLLQNPPMSDSSKSFGLKDISKNETSKTHVENCGEVSDAASGKDDESYALPDLNLDLTMNIPSPSPSSAENNLKPIHESKSSRKLHLASPSTLLLFQ* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02368 228 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Rops2g02368 228 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Rops2g02368 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Rops2g02368 228 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Rops2g02368 228 SMART sant 12 62 IPR001005 -
Rops2g02368 228 SMART sant 65 113 IPR001005 -
Rops2g02368 228 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Rops2g02368 228 Gene3D - 5 65 - -
Rops2g02368 228 CDD SANT 68 111 IPR001005 -
Rops2g02368 228 MobiDBLite consensus disorder prediction 132 160 - -
Rops2g02368 228 MobiDBLite consensus disorder prediction 132 150 - -
Rops2g02368 228 CDD SANT 15 60 IPR001005 -
Rops2g02368 228 FunFam MYB-related transcription factor 12 65 - -
Rops2g02368 228 MobiDBLite consensus disorder prediction 189 206 - -
Rops2g02368 228 FunFam Transcription factor MYB7 68 160 - -
Rops2g02368 228 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 189 - -
Rops2g02368 228 Gene3D - 68 136 - -
Rops2g02368 228 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Rops2g02368 228 MobiDBLite consensus disorder prediction 188 215 - -
Rops2g02368 228 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02368 Rops-Chr2 38020236 38021520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02368 2 196 MYB Transcription Factor Family AT4G09460 55.288 1.07e-76 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g02368 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02368 K09422 - gmx:100814923 361.303