Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02346 ATGGCTCAGGTTCAGGTTCAGCCTCAGAATGCGATGCCCGGTGCCAACGGCGGTGCTGCTGCTCCTGCGGGGTCTGCGGCGGGTGGCGGTGGAAATCAGTTCGTAACGACGTCGCTTTATGTTGGAGATCTCGACCCGAATGTTACGGATTCGCAGCTTTACGACCTGTTCAACCAATTGGGTCAGGTCGTGTCTGTTAGGGTTTGCCGGGACTTGACCACTAGGAGGTCCCTCGGTTATGGTTATGTCAACTATAGCAACCCACAAGATGCTGCCAGAGCATTGGATGTTCTGAACTTCACTCCTCTCAACAACAAGCCCATCCGTATTATGTATTCGCATCGTGATCCCAGTATCCGTAAAAGTGGGGCAGGAAATATATTTATTAAGAATTTGGACAGGGCAATTGACCACAAGGCATTACATGATACCTTCTCTACATTTGGGAATATCCTTTCTTGCAAGGTAGCTACGGATTCATCTGGCCAATCAAAAGGCTATGGGTTTGTGCAATTCGATAATGAGGAGGCCGCTCAAAAAGCCATAGAGAAGCTGAATGGTATGCTGTTGAATGATAAGCAAGTATATGTGGGACCCTTCCTTTGCAAGCAAGAGAGAGAGAGTGCAATTGACAAGGAAAAATTCAACAATGTTTTTGTAAAGAATCTATCAGAATCAACCACTGATGATGAATTGAAGAATACTTTTGGTGAATTTGGAACAATTACAAGTGCTGTAGTTATGAGGGATGGGGATGGAAAATCAAAGTGCTTTGGATTTGTGAACTTTGAGAATGTTGACGATGCTGCTAGGGCTGTTGAGGCTCTTAATGGGAAAAAAATTGATGACAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAGCAGGAATTGAAACTTAAATTTGAGCAGAGCATGAAAGAAGCTGCAGATAAGTATCAAGGGGCAAACTTGTACATCAAAAATTTAGATGATAGCATTGGTGATGATAAACTTAAGGAGTTGTTCTCCCCCTTTGGTACCATTACCTCATGCAAGGTTATGAGAGACCCCAATGGCATAAGTCGAGGATCGGGGTTTGTTGCATTCACAACTGCTGATGAGGCATCTAGAGCACTCCTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTGACTCCGGCCCAGCGGAAAGAAGATAGAAGGGCTAGACTGCAGGCTCAATTTGCTCAAATGCGGCCTGTGGCAATGCCACCATCTGTTGCTCCTCGTGTACCAATGTACCCCCCGGGTGGTCCAGGTATGGGTCAACAAATATTTTATGGTCAAGGCCCTCCTGCTATAATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAACTTGTGCCTGGTATGAGGCCTGGTGGGGCTCCTGTGCCAAATTTCTTTGTGCCAATGGTTCAGCAGGGACAACAGGGGCAGCGTCCTGGTGGAAGACGTGCAGGTGCAGTCCAGCAGTCTCAGCAGCCAGTTCCACTTATGCCACAGCAGATGCTCCCTAGGGGACGTGTGTATCGTTATCCTCCTGGTAGGGGTATGCCTGATGTTCCCATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTTCCATATGATGTGGGTGGGATGCCAATGCGTGATGCATCACTCTCCCAGCAAATTCCTATTGGTGCTTTGGCTTCTGCTCTGGCTAATGCTTCTCCAGAGCAGCAGAGGACGATGCTGGGTGAGAATCTTTACCCCCTTGTGGAACAGTTGGAGCCTGAAAATGCTGCCAAAGTGACAGGCATGCTTCTGGAGATGGACCAGACTGAAGTTCTGCACTTGCTCGAGTCACCAGATGCCCTGAAAGCTAAGGTTTCTGAGGCAATGGATGTCCTTAGGAACGTTGCACAGCAGCAGCAGCAGGCTGGCGGTGCTACTGATCAGCTGGCTTCATTATCACTTAATGACAGCCTTTCTTAA 1977 0.476 MAQVQVQPQNAMPGANGGAAAPAGSAAGGGGNQFVTTSLYVGDLDPNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVLNFTPLNNKPIRIMYSHRDPSIRKSGAGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYGFVQFDNEEAAQKAIEKLNGMLLNDKQVYVGPFLCKQERESAIDKEKFNNVFVKNLSESTTDDELKNTFGEFGTITSAVVMRDGDGKSKCFGFVNFENVDDAARAVEALNGKKIDDKEWYVGKAQKKSEREQELKLKFEQSMKEAADKYQGANLYIKNLDDSIGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFTTADEASRALLEMNGKMVVSKPLYVTPAQRKEDRRARLQAQFAQMRPVAMPPSVAPRVPMYPPGGPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPVPNFFVPMVQQGQQGQRPGGRRAGAVQQSQQPVPLMPQQMLPRGRVYRYPPGRGMPDVPMPGVAGGMFSVPYDVGGMPMRDASLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPDALKAKVSEAMDVLRNVAQQQQQAGGATDQLASLSLNDSLS* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02346 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 195 IPR000504 GO:0003723
Rops2g02346 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 321 389 IPR000504 GO:0003723
Rops2g02346 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 109 IPR000504 GO:0003723
Rops2g02346 658 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 286 IPR000504 GO:0003723
Rops2g02346 658 Gene3D - 201 301 IPR012677 -
Rops2g02346 658 FunFam Polyadenylate-binding protein 302 407 - -
Rops2g02346 658 Pfam Poly-adenylate binding protein, unique domain 567 631 IPR002004 GO:0003723
Rops2g02346 658 FunFam Polyadenylate-binding protein 24 125 - -
Rops2g02346 658 FunFam Polyadenylate-binding protein 206 301 - -
Rops2g02346 658 SUPERFAMILY RNA-binding domain, RBD 37 204 IPR035979 GO:0003676
Rops2g02346 658 SUPERFAMILY RNA-binding domain, RBD 215 400 IPR035979 GO:0003676
Rops2g02346 658 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 559 636 IPR002004 GO:0003723
Rops2g02346 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 293 IPR000504 GO:0003723
Rops2g02346 658 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 38 632 IPR006515 GO:0003723
Rops2g02346 658 MobiDBLite consensus disorder prediction 481 500 - -
Rops2g02346 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Rops2g02346 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 319 396 IPR000504 GO:0003723
Rops2g02346 658 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 197 IPR000504 GO:0003723
Rops2g02346 658 SUPERFAMILY PABC (PABP) domain 500 651 IPR036053 GO:0003723
Rops2g02346 658 MobiDBLite consensus disorder prediction 1 27 - -
Rops2g02346 658 FunFam Polyadenylate-binding protein 555 637 - -
Rops2g02346 658 Gene3D - 32 125 IPR012677 -
Rops2g02346 658 CDD RRM1_I_PABPs 38 117 IPR034364 -
Rops2g02346 658 CDD RRM3_I_PABPs 215 294 - -
Rops2g02346 658 SMART rrm1_1 38 111 IPR000504 GO:0003723
Rops2g02346 658 SMART rrm1_1 126 198 IPR000504 GO:0003723
Rops2g02346 658 SMART rrm1_1 217 289 IPR000504 GO:0003723
Rops2g02346 658 SMART rrm1_1 320 392 IPR000504 GO:0003723
Rops2g02346 658 Gene3D - 302 404 IPR012677 -
Rops2g02346 658 Gene3D - 126 198 IPR012677 -
Rops2g02346 658 CDD RRM4_I_PABPs 318 396 - -
Rops2g02346 658 FunFam Polyadenylate-binding protein 126 199 - -
Rops2g02346 658 Gene3D - 555 638 - -
Rops2g02346 658 PANTHER RNA BINDING PROTEIN 36 99 - -
Rops2g02346 658 SMART rrm2_1 38 111 IPR003954 GO:0003676
Rops2g02346 658 SMART rrm2_1 126 198 IPR003954 GO:0003676
Rops2g02346 658 SMART rrm2_1 217 289 IPR003954 GO:0003676
Rops2g02346 658 SMART rrm2_1 320 392 IPR003954 GO:0003676
Rops2g02346 658 CDD RRM2_I_PABPs 123 199 IPR045305 -
Rops2g02346 658 SMART poly_2 571 634 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02346 Rops-Chr2 37625901 37632444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02346 1 654 Eukaryotic Initiation Factors Gene Family AT4G34110 71.775 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02346 K13126 - gmx:100813735 1115.14