Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02333 ATGCAAGGTCAAAGGAGGACTATTGGGTCCTTCCCAGCTATTGTTAACATGATGCAAGGGCCTAGTTCTAGTGGTACTGATATGAATCGTCAGTCTTCCTTGAATCATGTGCAAAATGCAGTAGATTTCCGGTTGTCAGATTATAGGGGGTCTTCTGGTGAGACTGCATGTTTACGAGGTACTGGTCCTAATGTGAGCTTTAGTGGCTGGAATAATGGTGAGCCTAGTTCTGGACTGAATCTGATCAACCAAGTCAGTGATGAAGGTCTAAAATCAGAACATGGGCCATCTTCTTCATGTACTGCTACTGCTGTGGATGGTCTCAGACCTGAGGAAAGGCAATTGCATGGGAATCAATCTAGAATTCACCCTTCCTTTTTACAAGGTTCCAGCTCCAATCATATCACCCAGAATATTAGTCTAGACATGGGGCACATTGCTAACACTGCTGATCGTGGGAAGGGCAAAGAAATTGGTAGTGGTGTTAATAACAGCAATCCTGTTGGATTAAATATAGAGAAGACATCATTTGGCAGTGCTTCATGCAATCATATAGGAAATTCATCTGAAAGTGCTGGATACATGGATTTGGGGGATAGTGCCAGTTCACGAAGTTCTTTTGTAAATTGGGGTCCTTCCTGCAAGAGAAAGGCCCTTGAAGGTAGTTCTAAGCAAGTGTGTACTGGAGGAAGCTCAAGCTCCCTTGTACAATCTGAAAATGGTTACTGGCCTACCGATCCTGTTGATCTTAATGCTTCTAGCAGCTTAAGTGATTCTGCACCTTTTGAGAATTTTCCTGCTAATAGTCCTCCATTACAGCAGAACACAAGAAATGAAGTGAGACAAGAAGCATCCAATGCATTTCCTTCGATGATAAGTGTTGCAGAAAGTGTGGAAAGCCCTCTAAGAAACTTTGATAGGAGAATAACCCAACTACAGCATCAGGAATCTGTACCTCTAAATTTAATATCAACAGGGAGTGTTAGGCATCATAATCATTCTTCTCCGCCTCATATACCTGGCTCTCTCTTATTTAATGATTCTTTGGAATTGAGGTTAACAGCTGGAGCAACAGCTGCTAATTCTGGTGCTCCTCAGAACCAATCATCTGCCTTGCACATGCATCCTTTTCCTTGGAATAGAGCTGTTAATCCTAGAGTGGCCAGAGCTTCAACTTCTTATAACTCTGGAGAAAGAGCTGTACGGGAAGATTTTAATTTTAGAATCTTTCCAAGAGATAGTACTGAGCACCCCATTAATGTGCCTGCATCTTCAGGACATGAACCTATGGGTTGGCATACATCTTCTAGTAATGTGAACAATGCTGGAGGTGTACCTCCTACACCCTGGTTTGGATCTAGTTCAAATGTCCACTCATTACCTAATCCCAGCTGGACTTTTAACCATGAAGTCCCAACAGAAAATCCACATAGTGTGTCAGAGTTTGGTCCTTGGTCTCTTTTTCCATCAATTAGCTCAGCATCTGGTACTCATAATAGCCATTCTACCCCCTCTAGCTCTGGCCCTCCTTCCTTTTCTCAGGGTTCTAGCAACAATCAACCATCTATGAGAACAGCATTTTTGATGGAAAGAAGGGGTGGAGATGTTCTCTCTGCTCCTCATTCATTGCGAGCATTAGCCTTTGACAATGAGGGGAGACGCCGACTAATATCCGAGATTCGCCAAGTTTTGATTGCAATGCGGAGGGGTGAGAACTTACGCGCTGAGGATTATATGCACTTTGACCCTTTCCTATATCATGGCATTGCTGAAATGCATGACAGGCACAGAGAAATGCGCCTTGATGTTGACAACATGTCTTACGAGGAATTGTTGGCATTGGAGGAGCGTATAGGAGACGTGAGCACTGGATTGAGTGAGGATGTCATTGTTAAGTTGATGAAACAGCGAATTTATGTGTCGATCATGACAGAGTTTTCTTTAGATCTTGAACCTTGCTGTATCTGTCAGGAGGAATATGCTGATGGAGAGAATGTTGGTTCACTAGATTGTGGGCATGAGTTCCACAGTAACTGCATCAAGCAGTGGCTAATGCAGAAGAATCTGTGCCCCATTTGCAAAACAACAGCCTTAGCTACATGA 2103 0.4322 MQGQRRTIGSFPAIVNMMQGPSSSGTDMNRQSSLNHVQNAVDFRLSDYRGSSGETACLRGTGPNVSFSGWNNGEPSSGLNLINQVSDEGLKSEHGPSSSCTATAVDGLRPEERQLHGNQSRIHPSFLQGSSSNHITQNISLDMGHIANTADRGKGKEIGSGVNNSNPVGLNIEKTSFGSASCNHIGNSSESAGYMDLGDSASSRSSFVNWGPSCKRKALEGSSKQVCTGGSSSSLVQSENGYWPTDPVDLNASSSLSDSAPFENFPANSPPLQQNTRNEVRQEASNAFPSMISVAESVESPLRNFDRRITQLQHQESVPLNLISTGSVRHHNHSSPPHIPGSLLFNDSLELRLTAGATAANSGAPQNQSSALHMHPFPWNRAVNPRVARASTSYNSGERAVREDFNFRIFPRDSTEHPINVPASSGHEPMGWHTSSSNVNNAGGVPPTPWFGSSSNVHSLPNPSWTFNHEVPTENPHSVSEFGPWSLFPSISSASGTHNSHSTPSSSGPPSFSQGSSNNQPSMRTAFLMERRGGDVLSAPHSLRALAFDNEGRRRLISEIRQVLIAMRRGENLRAEDYMHFDPFLYHGIAEMHDRHREMRLDVDNMSYEELLALEERIGDVSTGLSEDVIVKLMKQRIYVSIMTEFSLDLEPCCICQEEYADGENVGSLDCGHEFHSNCIKQWLMQKNLCPICKTTALAT* 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02333 700 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 164 698 IPR045191 GO:0061630
Rops2g02333 700 MobiDBLite consensus disorder prediction 493 521 - -
Rops2g02333 700 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 698 IPR013083 -
Rops2g02333 700 ProSiteProfiles Zinc finger RING-type profile. 653 694 IPR001841 -
Rops2g02333 700 SUPERFAMILY RING/U-box 633 697 - -
Rops2g02333 700 FunFam E3 ubiquitin-protein ligase MBR2 620 698 - -
Rops2g02333 700 MobiDBLite consensus disorder prediction 429 454 - -
Rops2g02333 700 MobiDBLite consensus disorder prediction 413 454 - -
Rops2g02333 700 MobiDBLite consensus disorder prediction 253 274 - -
Rops2g02333 700 SMART ring_2 653 693 IPR001841 -
Rops2g02333 700 Pfam Ring finger domain 653 694 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02333 Rops-Chr2 37432917 37438303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02333 15 700 C3H Transcription Factor Family AT2G15530 37.483 3.54e-118 368
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02333 - K19041 gmx:100809024 1107.82