Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02331 ATGAATGTTGAAGATCAAGGCCCTCATGTGGGCTTCTTGTGGGAAAACCAATCATGGGGTCTCTCCAATTCTAATAACTCAGGTGAAGGCAAAGAGAAGATAGACATGATCAAACAACAGGATCAGAAAGAAGGAAATGAAGGAGAAGCTCTTGTGAATAAGAAGCGAAGCCGAGGGAGAAGTGAGAAGAATGTTACTAACGGTGAAGGGAAAGATGCAAATCATGAAATGCATATATGGACTGAGAGAGAAAGAAGGAAGAAAATGAGGAACATGTTCGCTAGCCTTCATGCTTTGCTTCCTCAGCTTCCTCCTAAGGCAGATAAATCAACCATTGTAGATGAAGCAGTGAACTACATAAAAAATCTACAGCAAACTGTGGAAAAGCTTGAGAAACAGAAACAAGAAAGGCTCCAATCTGTATCCCCATTTGGGTGTGAGTCATCTGTGATAAACTCACAGTGGCATCCCTATGACTCAAGAGAGACACTCATTGTTGATCAGGGATCTTCAAATAACTTGTCAAATGCAATGACAACTTCAAATCCTTCAAATTCATGTTCAGTGACTCGGCCACCAGTGGCTTTTCAAACATGGTCTTCACCAAATGTAGTATTGAACATTTGTGGAGATGAAGCACAATTCTGCATTTGTGCAACTAAGAAGCCAGGTGTCTTGACCACCATTGCTTTTGTGCTTGAGAAACACAAGATTGATGTCATATCTGCCAATGTCTTGTGCAATGGCAATGGGAACGTGTATATGATTCTAGCCCATGTTTTAAAACCTGAATGTGAAGCAACCTGCAACTCAGGTTTTGCAGGACCTATTGAGGGACTTGTATTGCAGGTTTTTAAACCTGATTGTCAAGCACAACACAGGTATTTAAAAGGTATGAAAGAGGCTCCTGGTGATCGTGGTCCCCTTGGCCTCCAAAATGTAAGTCCAGGAGTAGGCACAAATGTCATGGTGCTGCTGGCAGCTGATGGTTATGATCCAGTTGAGGTTGACGCAGATGGAGTAGGATCCACTCCACAAGCTCTAACAGGAGGTGGTCCGAACCGAGGTACTGGTGTGTATCCTGGTAGTTGTGATGTGACCTATAATGCAACAACAAAGTGTCAAAAGTAA 1131 0.4262 MNVEDQGPHVGFLWENQSWGLSNSNNSGEGKEKIDMIKQQDQKEGNEGEALVNKKRSRGRSEKNVTNGEGKDANHEMHIWTERERRKKMRNMFASLHALLPQLPPKADKSTIVDEAVNYIKNLQQTVEKLEKQKQERLQSVSPFGCESSVINSQWHPYDSRETLIVDQGSSNNLSNAMTTSNPSNSCSVTRPPVAFQTWSSPNVVLNICGDEAQFCICATKKPGVLTTIAFVLEKHKIDVISANVLCNGNGNVYMILAHVLKPECEATCNSGFAGPIEGLVLQVFKPDCQAQHRYLKGMKEAPGDRGPLGLQNVSPGVGTNVMVLLAADGYDPVEVDADGVGSTPQALTGGGPNRGTGVYPGSCDVTYNATTKCQK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02331 376 MobiDBLite consensus disorder prediction 31 78 - -
Rops2g02331 376 CDD bHLH_AtbHLH_like 78 131 IPR045239 -
Rops2g02331 376 Gene3D - 65 140 IPR036638 GO:0046983
Rops2g02331 376 SMART finulus 81 129 IPR011598 GO:0046983
Rops2g02331 376 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 123 IPR011598 GO:0046983
Rops2g02331 376 Pfam Helix-loop-helix DNA-binding domain 77 124 IPR011598 GO:0046983
Rops2g02331 376 MobiDBLite consensus disorder prediction 16 30 - -
Rops2g02331 376 MobiDBLite consensus disorder prediction 14 78 - -
Rops2g02331 376 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 14 259 IPR044278 GO:0003700|GO:0006355|GO:0009960
Rops2g02331 376 Coils Coil 113 140 - -
Rops2g02331 376 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 72 148 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02331 Rops-Chr2 37418592 37424535 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02331 19 266 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 42.336 3.47e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g02331 HLH 6.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02331 - - aprc:113859839 301.597