Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02330 ATGCGTGGCAGTTTAGAACCGTTGGATTTGGGGGTTCAGATTCCATACTACTTCAGGTGCCCAATCTCGCTTGAGCTTATGCGTGACCCGGTGACAGTTTGCACCGGTCAGACCTACGACCGTGGAAGCATCGAGTCATGGGTGAACACTGGCAACATCACGTGCCCTGTCACGCGAGCACCTCTCAAAGACTTCACCTTAATCCCAAACCACACCTTACGCCGTCTCATCCAAGAGTGGTGCGTTGCCAACCGCGCTTTTGGGGTTGAGCGTATTCCAACTCCCAAACAGCCCGCAGACCCAGCCTTGGTTCGTTCTTTGCTTAACCAAGTTTCATCCGATTCCGCACCAACTCACCTCCGACTCAACTCGATTCGTCGACTCAGAGCACTCGCTCGTGACTCGGATTATAACCGCTCTCTCATTGCATCTCACAACGTTCGTCACATCCTATCACCTATCCTCTTCAACCATAACGCTTCCGACGAGTTGAATCACGAGTCACTCGCGTTACTTGTTCTCTTCCCATTTACTGAGTCAGAATGCGCTTCCATAGCTTCCGACTCGGATAAGATTAAATACCTCTCGCATCTGCTATCTCATTCTTCTGTTGATGTGCGAGTCAACTCGGCCGCGTTGATTGAGATCGTCGTCGCCGGGACTCACTCGCCGGAGCTCAGAACTCAGGTGAGCAATGTCGACGGGATCCACGAAGCCGTCGTGGAGATTCTCAGGAACCCGATCTCGTACCCTCGCGCACTCAAGGTTGGGATCAAGGCCTTGTTCGCGTTATGCCTGGTGAAACAGACTCGGCACAGAGCGGTGGCGGCTGGAGCGCCGGCGGTTCTCGTCGACCGGCTCGCCGACTTCGAGAAATGCGACGCGGAGAGGGCGCTAGCGACGGTAGAGCTTCTTTGCCGGATTCCGGCGGGTTGCGCGGCGCTCGCCGGTCACGCGCTCACCGTGCCGATGCTGGTGAAAATAATATTAAAGATATCAGATCGTGCGACGGAGTACGCCGCCGGAGCGTTGTTGTCGCTGTGTTCGGAATCGGAGAAGTGTCAGAGGGAGGCGGTGGCGGCGGGTGTGCTGACTCAGCTTTTGCTTCTGGTACAGAGCGATTGCACGGAGAGAGCAAAGAGGAAGGCGCAACTATTGCTAAAGCTTCTTCGGGATTCGTGGCCTCAAGATACCATCGGAAATTCTGACGATTTCGCGTGCAGCCAGGTTATTGTGGTGCCCTTTTGA 1248 0.5489 MRGSLEPLDLGVQIPYYFRCPISLELMRDPVTVCTGQTYDRGSIESWVNTGNITCPVTRAPLKDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQVSSDSAPTHLRLNSIRRLRALARDSDYNRSLIASHNVRHILSPILFNHNASDELNHESLALLVLFPFTESECASIASDSDKIKYLSHLLSHSSVDVRVNSAALIEIVVAGTHSPELRTQVSNVDGIHEAVVEILRNPISYPRALKVGIKALFALCLVKQTRHRAVAAGAPAVLVDRLADFEKCDAERALATVELLCRIPAGCAALAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESEKCQREAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDTIGNSDDFACSQVIVVPF* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02330 415 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Rops2g02330 415 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Rops2g02330 415 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Rops2g02330 415 SUPERFAMILY ARM repeat 103 390 IPR016024 -
Rops2g02330 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Rops2g02330 415 SUPERFAMILY RING/U-box 12 90 - -
Rops2g02330 415 Gene3D - 91 401 IPR011989 -
Rops2g02330 415 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Rops2g02330 415 CDD RING-Ubox_PUB 15 67 IPR045210 -
Rops2g02330 415 PANTHER WDSAM1 PROTEIN 12 396 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02330 Rops-Chr2 37402393 37404094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02330 1 415 U-box Gene Family AT3G19380 66.194 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02330 - - var:108341190 687.952