Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02324 ATGGGGTACCATATCAATGACAACTCTGAAGGACAAAATGAAGAAGAGGCAATAGTTTATAGAGGGCTGTCACAGAGCTATTATAACTCGAGGGAATTCTCAGTGGCGTCACAATCTCTGTCTGAATACAACTCATCGAATATGCCTTGCTTGCCAACAACCGTGAGATCGCATAGCCTTCCATTTGGATTAAATGATGTTGCAAGAGGACCTATGACTTCTATTGACCATACTGAATGCCCCATATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGCCAGCTAGTAAGGTTGCTCGAACTTTCTGGTGGATGCCTGCCTCTGGCCCGAGTTCCAGTAGAGTACCATAAAATTTATGGGAAACCTCTTTATGGAGCTGAATATGGGACAAAGAAGTTGGTAAATCTTATCAAGAAGATGGGTGATACCATGGCTGTAGGGAAGAAAGGGAATAGTAAATTTGTGTATCTCGAAAGCTGGAAGGAGGCCCAAGTTTCATGTTCTTGGAGGAGCATCGGATTGATTACCCATAAACGCCTTTCTCCAATTACTGCCTCTAATTATTGGAAGTTCTGGTTTTCTAGTATATTGATGGCTACCTCAAGTAAATCTACACCAGTAATTGGTTCAGACCTGTTGGAACAGAAGGGGAAAAATATTCCTGAATCAAATGCAAACATGCTCCAATGTCCTTTAAGCCAGCAACACCGCAGCTCCTTAGATGGCTCGGTAGCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCCGAAGATGTAGCTGGTAATATAAGAATGGCTTTGCGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGACGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTTGACAACCCTCCACCATCTTCTATCATGCTAATATCTGGAGATGTTGATTTTGCTCCAGCGCTTCACATTCTTGGTCAGCGAGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCTTCTGCCCTATGCAATGCTGGTAAATTTGTCTGGGACTGGCCTAGCGTGGTCCGTGGAGAAGGCTTTGTTCCCCCCTCAAAGGCTTTAGTGCCACCCCGTGGAGGTTCAATTGAGCTTGCTGGTTATTTGATGGGGTGCCATATCAATGACAACTCTGAAGGACAAAATGAAGAAGAGGCAATAGTTTATAGAGGGCTGTCACAGAGCTATTATAACTCGAGGGAATTCTCAGTGGTATCACAATCTCTGTCTGAATACAACTCATCGAATATGCCTTGCTTTCCAACAACTGTGAGATCGCATAGCCTTCCATCTGGATTAAATGATGTTGCAGGAGGACCTATGACTTCTATTGACCATACTGAATGCCCCATATGGGTACAGCCTGGGGATTTAAATGGTCTCAAGGGCCAGCTAGTAAGGTTGCTCGAACTTTCTGGTGGATGCCTGCCTCTGGCCCGAGTTCCATCTGAGTACCAGAAAATTTATGGGAGACCTCTTTATGTAGCTGACTATGGGGCAACGAAGTTGGTCAATCTTTTCAAGAAGATGGGTGATACCATGGCTGTGGAAGGGAAGGGGCATCATAAATTTGTGTATCTCAGAAACTGGAAGGCATGTCCAAGTGCTCCTCCGCTGTCTCTTGCTAAGAAAGATAAGAAAGGAAAAGGGGCACAGGAAGAGAATGCAAATGTTGTCACTGGTGGCTGCTCTTCAGATGAGTTCTCAGATGAAGAAAGAGTAGTCATAGAAGAACATGATGAGAGAAGTTGCACAGGAAAGGGTAATCAGGGGAGAGCAGCCAGATGTGAAATCGATGACCATATTCTCAAGCAGTTCAAGTATGAGCTGCAAGAGATTCTAGTCAGTTATTCTTGTCGAATATTCCTAGGTTGTTTTGAGGCTATATACCAGCAAAGGTACAAGAAACAACTAGAATATCGGAGATTTGGTGTGGACAAGTTGGAGGATTTGTTGGAGAAAGTGAGTGATGTGGTAGTATTGCATGAGGAGCCAGTAAGCAAGAAGAAGTTCCTAGCTGCTGCTGTGGAGGGTTAG 2187 0.4426 MGYHINDNSEGQNEEEAIVYRGLSQSYYNSREFSVASQSLSEYNSSNMPCLPTTVRSHSLPFGLNDVARGPMTSIDHTECPIWVQPGDLNGLKGQLVRLLELSGGCLPLARVPVEYHKIYGKPLYGAEYGTKKLVNLIKKMGDTMAVGKKGNSKFVYLESWKEAQVSCSWRSIGLITHKRLSPITASNYWKFWFSSILMATSSKSTPVIGSDLLEQKGKNIPESNANMLQCPLSQQHRSSLDGSVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALCNAGKFVWDWPSVVRGEGFVPPSKALVPPRGGSIELAGYLMGCHINDNSEGQNEEEAIVYRGLSQSYYNSREFSVVSQSLSEYNSSNMPCFPTTVRSHSLPSGLNDVAGGPMTSIDHTECPIWVQPGDLNGLKGQLVRLLELSGGCLPLARVPSEYQKIYGRPLYVADYGATKLVNLFKKMGDTMAVEGKGHHKFVYLRNWKACPSAPPLSLAKKDKKGKGAQEENANVVTGGCSSDEFSDEERVVIEEHDERSCTGKGNQGRAARCEIDDHILKQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKQLEYRRFGVDKLEDLLEKVSDVVVLHEEPVSKKKFLAAAVEG* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02324 728 CDD LOTUS 653 715 - -
Rops2g02324 728 CDD LOTUS 508 577 - -
Rops2g02324 728 CDD PIN_limkain_b1_N_like 245 370 - -
Rops2g02324 728 ProSiteProfiles OST-type HTH domain profile. 652 726 IPR025605 -
Rops2g02324 728 Pfam OST-HTH/LOTUS domain 653 715 IPR025605 -
Rops2g02324 728 Pfam OST-HTH/LOTUS domain 90 154 IPR025605 -
Rops2g02324 728 Pfam OST-HTH/LOTUS domain 509 574 IPR025605 -
Rops2g02324 728 Gene3D - 237 390 - -
Rops2g02324 728 PANTHER LIMKAIN B LKAP 224 690 IPR024768 GO:0005777|GO:0010468
Rops2g02324 728 Gene3D - 648 721 IPR041966 -
Rops2g02324 728 Gene3D - 507 576 IPR041966 -
Rops2g02324 728 Gene3D - 88 157 IPR041966 -
Rops2g02324 728 ProSiteProfiles OST-type HTH domain profile. 507 579 IPR025605 -
Rops2g02324 728 Pfam NYN domain 245 383 IPR021139 GO:0004540
Rops2g02324 728 ProSiteProfiles OST-type HTH domain profile. 88 160 IPR025605 -
Rops2g02324 728 CDD LOTUS 89 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02324 Rops-Chr2 37288459 37294526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02324 241 395 C2H2 Transcription Factor Family AT5G61190 41.290 7.37e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02324 - - gmx:100818186 944.88