Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02323 ATGCTCCAATGTCCTTTAAGCCAGCAACATCGCAGCTCCTTAGATGGCCCGGTAGCTATCCTTTGGGATATTGAAAATTGTCCTGTTCCAAGTGATGTACGCCCCGAAGATGTAGCTGGTAATATAAGAATGGCTTTGCGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAATGCTTTCCCTAGGCGACTTAGAGAGGGCTGTCAGAGAACTGGTGTCAAACTTATTGACGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCTATCTTGGTTGACATGTTCTTATTTGCTCTCGACAACCCTCCACCATCTTCTATCATGCTAATATCTGGAGATGTTGATTTTGCTCCAACGCTTCACATTCTTGGTCAGCGAGGATATACTGTAATTCTTGTCATCCCTGCTGGGTGGGTGTTTCTTCTGCTCTTTGCAATGCTGGTAAATTTATCTGGGACTGGCCTAGCGTGGCCCGTGGAGAAGGCTTTGTTACCCCCTCAAAGGCTTTAG 534 0.4588 MLQCPLSQQHRSSLDGPVAILWDIENCPVPSDVRPEDVAGNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSIMLISGDVDFAPTLHILGQRGYTVILVIPAGWVFLLLFAMLVNLSGTGLAWPVEKALLPPQRL* 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02323 177 Gene3D - 10 147 - -
Rops2g02323 177 Pfam NYN domain 17 142 IPR021139 GO:0004540
Rops2g02323 177 CDD PIN_limkain_b1_N_like 17 143 - -
Rops2g02323 177 PANTHER LIMKAIN B LKAP 6 144 IPR024768 GO:0005777|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02323 Rops-Chr2 37287884 37288417 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02323 6 143 C2H2 Transcription Factor Family AT5G61190 41.304 5.95e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02323 - - gmx:100818186 281.952