Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02322 ATGCTGGTCTGGACTTCAAACTTTCTGCTTATAAAATTTGCAAAAGGAAGACTTGACAAAACAAGATTACGATTGTCCAATGAGCTGGCCAAGCTTTATGTTCATGTGAAACTTCTTATAGACTCTGTAGGTGCATATATGATGAATGAGGTGGAAATGGTTTTTGTGGGTATAGATGGAGTTGTTGAAAATGGGGGCATAATTAACATGATGGAGATATACCAAATAGCATTGGTTGCACACAGTATGAATAACCAGTTTATGACGCTGCAGATAGCTACAGGGTCATATTTCTCCCTCAGTGCTGCACCACATGGTTTCCTCCCTCACCTTAGAAGTTACCTTACACTTAAGGTCAGCCTTGCATTGACACCCAGGAAATTCTGGTTTTCTAGTATATTGATGGCTACCTCAAGTAAATCTACGTCAGTAATGGGTTCAGACCCGTTGGAACAGAAGGGGGAAAATATTCCTGAATCAAATGCAAACATGCTCCAATGTCCTTTAAGCCAGCAACACCGCAGCTCCTTAGATGGCCCCGTAGCTATCTTTTGGGATATTGAAAACTGTCCTGTTCCAAGTGATGTACCCCCCGAAGATGTAGCTGGTAATATAAGAATGGCTTTGCGGGTAATTAAAGAAGCTGCTGTTATGATGTTTTCTGCTTATGGGGATTTCAGTGCTTTCCCTAGGCGAGTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGACGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCTATCGTGGTTGACATGTTCTTTTTTGCTCTCGACAACCGTCCACCATCTTCTATCATGCTAATATCTGGAGATGTTGTTTTTGCTCCAACACTTCACATTCTTGGTCAGCGAGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCTCCTGCCTTATGCAATGCTTGCAATTTTGTCTCTGACTGGCCTAGCATGGCTCGTGGAAAAGGCTTTGTTTCCCCCTCAAAGACTGCAGTGCTACCTTGTGGAGGTTCAATTGAGCTTGCTGAATCTTCGAAGGGGTCCCATATCAATGACGACTCTGAGGGCCATATATGGGTACAGCGTGGGGATTTACATGGTCTCAAGGGTGAGCTAGTAAAGTTGCTCGAACTGTCTGGAGGATGCCTGCCTCTTGCCCAAGTTCCAGCAGAGTACCAGAATCATTATGGGAAACCTCTTTATGCTGAACAAGGGACAAAGAAGTTGGTAAATCTTATCAGGAACATGGGTGATACCATCGCTGTGGGGAAGCAAGGGAATAGTAAATCTGTGTATCTCGAAAGCTGGAAGGCAGACCCAAATGCTCCTCCACCGTCTCTATAA 1368 0.4415 MLVWTSNFLLIKFAKGRLDKTRLRLSNELAKLYVHVKLLIDSVGAYMMNEVEMVFVGIDGVVENGGIINMMEIYQIALVAHSMNNQFMTLQIATGSYFSLSAAPHGFLPHLRSYLTLKVSLALTPRKFWFSSILMATSSKSTSVMGSDPLEQKGENIPESNANMLQCPLSQQHRSSLDGPVAIFWDIENCPVPSDVPPEDVAGNIRMALRVIKEAAVMMFSAYGDFSAFPRRVREGCQRTGVKLIDVPNGRKDAADKAIVVDMFFFALDNRPPSSIMLISGDVVFAPTLHILGQRGYTVILVIPAGVGVSPALCNACNFVSDWPSMARGKGFVSPSKTAVLPCGGSIELAESSKGSHINDDSEGHIWVQRGDLHGLKGELVKLLELSGGCLPLAQVPAEYQNHYGKPLYAEQGTKKLVNLIRNMGDTIAVGKQGNSKSVYLESWKADPNAPPPSL* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02322 455 SUPERFAMILY NagB/RpiA/CoA transferase-like 23 89 IPR037171 -
Rops2g02322 455 Gene3D - 369 442 IPR041966 -
Rops2g02322 455 Pfam Initiation factor 2 subunit family 27 88 IPR000649 GO:0044237
Rops2g02322 455 Pfam NYN domain 180 319 IPR021139 GO:0004540
Rops2g02322 455 CDD LOTUS 376 441 - -
Rops2g02322 455 Gene3D - 173 325 - -
Rops2g02322 455 Gene3D - 11 97 IPR042529 -
Rops2g02322 455 PANTHER LIMKAIN B LKAP 159 354 IPR024768 GO:0005777|GO:0010468
Rops2g02322 455 Coils Coil 455 455 - -
Rops2g02322 455 CDD PIN_limkain_b1_N_like 180 304 - -
Rops2g02322 455 ProSiteProfiles OST-type HTH domain profile. 372 445 IPR025605 -
Rops2g02322 455 Pfam OST-HTH/LOTUS domain 376 438 IPR025605 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02322 Rops-Chr2 37283610 37284575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02322 14 97 Eukaryotic Initiation Factors Gene Family AT1G53880 64.286 2.19e-23 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02322 - - gmx:100818186 354.369