Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02316 ATGGATTCTCCTACCAAGTCTCAAGAAAGTTACAAAGTAGGGCCGCGTAGTGTCCACGATGGTGCCACGTCTACAGTTAACATTGCCAGCTGTCAGCCTTGCATTGACACCCAGGTAGCTCTGCTTCTTGGTCTAGTGGTTTCAATTACAATTCGTTTGGTAGGTCTTGCTTGTCTTAACATTTATGGTGCAACAAATGTGTCTATTTTGGGTCTTACACTAGAGAAATTCTGGTTTTCTAGTATATTGATGGCTACCTCAAGTAAATCTACGCCAGTAATGGGTTCAGACCCGTTGGAACAGAAGGGGGAAAATATTCCTGAATCAAATGCAAACATGCTCCAATGTCCTTTAAGCCAGCAACACCGCAGCTCCTTAGATGGCCCCGTAGCTATCTTTTGGGATATTGAAAACTGTCCTGTTCCAAGTGATGTACCCCCCGAAGATGTAGCTGGTAATATAAGAATGGCTTTGCGGGTAAATAAAGAAGCTGGTATGATGTTTTCTGCTTATGGGGATTTCAGTGCTTTCCCTAGGCGAGTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGACGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCTATCGTGGTTGACATGTTCTTTTTTGCTCTCGACAACCGTCCACCATCTTCTATCATGCTAATATCTGGAGATGTTGTTTTTGCTCCAACACTTCACATTCTTGGTCAGCGAGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCTCCTGCCTTATGCAATGCTTGCAATTTTGTCTCTGACTGGCCTAGCATGGCTCGTGGAAAAGGCTTTGTTTCCCCCTCAAAGACTGCAGTGCTACCTTGTGGAGGTTCAATTGAGCTTGCTGAATCTTCGAAGGGGGTTCATGTTCTTGGACAAGCATCGGATTTGATTACCCATAAACGCCTTTCTCCAATTACTGCCTCTAATTATTGGAAATTCTGGTTTTCTAGTATATTGATGGCTACCTCAAGTAAATCTATGCCAGTAATGGGTTCAGACCCGTTGGAACAGAAGGGGGAAAATATTCCTGAATCAAATGCAAACATGCTCCAATGTCCTTTAAGCCAGCAACACCGCAGCTCCTTAGATGGCCCCGTAGCTATCTTTTGGGATATTGAAAACTGTCCTGTTCCAAGTGATGTACCCCCCGAAGATGTAGCTGGTAATATAAGAATGGCTTTGCGGGTAAATAAAGAAGCTGGTATGATGTTTTCTGCTTATGGGGATTTCAGTGCTTTCCCTAGGCGAGTTAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTTATTGACGTTCCCAATGGGAGAAAAGATGCTGCTGACAAAGCTATCGTGGTTGACATGTTCTTTTTTGCTCTCGACAACCGTCCACCATCTTCTATCATGCTAATATCTGGAGATGTTGTTTTTGCTCCAACACTTCACATTCTTGGTCAGCGAGGATATACTGTAATTCTTGTCATCCCTGCTGGGGTGGGTGTTTCTCCTGCCTTATGCAATGCTTGCAATTTTGTCTCTGACTGGCCTAGCATGGCTCGTGGAAAAGGCTTTGTTTCCCCCTCAAAGACTGCAGTGCTACCTTGTGGAGGTTCAATTGAGCTTGCTGAATCTTCGAAGGGGTCCCATATCAATGACGACTCTGAGGGCCATATATGGGTACAGCGTGGGGATTTACATGGTCTCAAGGGTGAGCTAGTAAAGTTGCTCGAACTTTCTGGAGGATGCCTGCCTCTTGCCCAAGTTCCAGCAGAGTACCAGAATCTTTATGGGAAACCTCTTTATGCTGAACAAGGGACAAAGAAGTTGGTAAATCTTATCAGGAACATGGGTGATACCATCGCTGTGGGGAAGCAAGGGAATAGTAAATCTGTGTATCTCGAAAGCTGGAAGGCAGGCCCAAATGCTCCTCCACCCTATCATAGATTGAGGGATGTCTCAGTGGTGTCACTATCTCCGAATGACCATCCTGAGTGCCATATATGGGTACAACGTGGGGATTTGAATGGTCTCAAGGGTGAGCTAGTAAAGTTGCTCCAACTTTCTGGAGGATACCTGCCTCTAGACCGAGTTCCAGCAGAGTACCAGAAAATTTATGGGAAACCTCTTTATGGAGCTGAATATGGGACAAAGAAGTTGGTAAATCTTATCACGAAGATTGGTTATCCCGTGGATGTGGGGAAGAAAGGGAATAGTAAATTTGTGTATCTCGAAAGCTGCAAGGCATGCCCCAGTGCTCCTCCACCATCTCTCACGTAA 2304 0.451 MDSPTKSQESYKVGPRSVHDGATSTVNIASCQPCIDTQVALLLGLVVSITIRLVGLACLNIYGATNVSILGLTLEKFWFSSILMATSSKSTPVMGSDPLEQKGENIPESNANMLQCPLSQQHRSSLDGPVAIFWDIENCPVPSDVPPEDVAGNIRMALRVNKEAGMMFSAYGDFSAFPRRVREGCQRTGVKLIDVPNGRKDAADKAIVVDMFFFALDNRPPSSIMLISGDVVFAPTLHILGQRGYTVILVIPAGVGVSPALCNACNFVSDWPSMARGKGFVSPSKTAVLPCGGSIELAESSKGVHVLGQASDLITHKRLSPITASNYWKFWFSSILMATSSKSMPVMGSDPLEQKGENIPESNANMLQCPLSQQHRSSLDGPVAIFWDIENCPVPSDVPPEDVAGNIRMALRVNKEAGMMFSAYGDFSAFPRRVREGCQRTGVKLIDVPNGRKDAADKAIVVDMFFFALDNRPPSSIMLISGDVVFAPTLHILGQRGYTVILVIPAGVGVSPALCNACNFVSDWPSMARGKGFVSPSKTAVLPCGGSIELAESSKGSHINDDSEGHIWVQRGDLHGLKGELVKLLELSGGCLPLAQVPAEYQNLYGKPLYAEQGTKKLVNLIRNMGDTIAVGKQGNSKSVYLESWKAGPNAPPPYHRLRDVSVVSLSPNDHPECHIWVQRGDLNGLKGELVKLLQLSGGYLPLDRVPAEYQKIYGKPLYGAEYGTKKLVNLITKIGYPVDVGKKGNSKFVYLESCKACPSAPPPSLT* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02316 767 ProSiteProfiles OST-type HTH domain profile. 573 646 IPR025605 -
Rops2g02316 767 CDD LOTUS 683 752 - -
Rops2g02316 767 PANTHER LIMKAIN B LKAP 108 338 IPR024768 GO:0005777|GO:0010468
Rops2g02316 767 Gene3D - 679 752 IPR041966 -
Rops2g02316 767 Gene3D - 570 643 IPR041966 -
Rops2g02316 767 ProSiteProfiles OST-type HTH domain profile. 682 754 IPR025605 -
Rops2g02316 767 Pfam NYN domain 382 520 IPR021139 GO:0004540
Rops2g02316 767 Pfam NYN domain 129 267 IPR021139 GO:0004540
Rops2g02316 767 CDD LOTUS 577 642 - -
Rops2g02316 767 CDD PIN_limkain_b1_N_like 382 505 - -
Rops2g02316 767 CDD PIN_limkain_b1_N_like 129 252 - -
Rops2g02316 767 Pfam OST-HTH/LOTUS domain 684 748 IPR025605 -
Rops2g02316 767 Pfam OST-HTH/LOTUS domain 577 639 IPR025605 -
Rops2g02316 767 Gene3D - 122 273 - -
Rops2g02316 767 Gene3D - 375 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02316 Rops-Chr2 37218964 37239219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02316 379 530 C2H2 Transcription Factor Family AT5G61190 37.255 6.42e-22 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02316 - - gmx:100818186 456.832