Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02308 ATGGATGCAGAAAGACAAAGGCGTGAGAAACTGAACCAGCGTTTCTATGCATTAAGAGTTGTGGTGCCTAATATATCCAAGATGGACAAGGCATCGTTACTGGGTGATTGGAGTATGCTAGACAAGGAGACCCACAGCCGCGTCACCGACATTAACCTTCGCGACAAGTTGAAGGAGCCAATCTTCGAGAAAGCCCATCGCACCGACTACATGGCCTGTTATATCTCGTTGGCAATCTGCAAACTCGCTCGTCTCTTTAGCATCACCGTCGTCGACTGGAAGGGAATCTCCGGTGAGGTCCCTCGCTGCATAACCACCTTACCATTGCTCCAAATCAGACTTCATCAGTAA 351 0.49 MDAERQRREKLNQRFYALRVVVPNISKMDKASLLGDWSMLDKETHSRVTDINLRDKLKEPIFEKAHRTDYMACYISLAICKLARLFSITVVDWKGISGEVPRCITTLPLLQIRLHQ* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02308 116 PANTHER MYC 2 55 IPR045084 GO:0003700|GO:0006355
Rops2g02308 116 Gene3D - 1 48 IPR036638 GO:0046983
Rops2g02308 116 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 44 IPR011598 GO:0046983
Rops2g02308 116 Pfam Helix-loop-helix DNA-binding domain 3 34 IPR011598 GO:0046983
Rops2g02308 116 SMART finulus 1 45 IPR011598 GO:0046983
Rops2g02308 116 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 3 35 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02308 Rops-Chr2 37096756 37097106 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02308 1 67 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 55.556 3.97e-18 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g02308 HLH 2.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02308 - - gmx:100804739 107.457