Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02298 ATGATTGGACTTGATGGATCAGTAACAGGTAGGGTGACCTCCTGTGAAACTCCATCAAGGATGCCTCAGTCAAGCTCTTTTCAAAATGAGGCAAGTTACAGAAGAAAGGACCACTTGACTTGTCACCTGTTACAACATCAAGGGAAAACTTTTAAATGTCCTATTGAGAATTGTAACCTTGACTTCTCTTTACAAAGCAATCTGAAAAGACATGTCAATGAGTTTCATCATGACAATTCTACCTCTACTACTTGTGTTGAAAGTCAGAAGCAGTATGTGTGTCCAGAAATTGGCTGTGGAAAGGTTTTCAGATTTGCATCAAGGCTAAGAAAGCATGAAGATTCTCATGTTAACTTGGAGTCAGTAGATGTAGTGTGCTTAGAGCCTGGTTGCATGAAACATTTCACCAATGCCCAGTGCCTAAGAGCCCATGTTAACTCGTGCCATCAATATGAGACCTGTGGCACTTGTGGGACTAAACAACTGAAGAAGAATATTAAGAGGCACCTCAACACACATGAATCTAGCAGTTCATCAGAGACCTTTAAATGTGAATTTAAGGGTTGTGACTGCACATTCTCAAGTAAATCTAATCTTCACAAGCATGAGAAGGTTGTGCACTTCAAAGAAAAGCCTTTTGTGTGTGGGTTTGATGGTTGTGGCATGAGATTTGCTTACAAACATGTGAGAGATAACCATGAAAAAACTGGGAAACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAAGAATTCAGGTCAAGGCCCAGGGGAGGGAAGAAGAGAAAATATCCTACTGTTGAAATAATAGTGAGGAAGAGAGTTACCCCACCAAGTCAATTAGAGAACTGGTTACTTATGCAGGATAGTGAGGAAGATGTGCATTGA 891 0.404 MIGLDGSVTGRVTSCETPSRMPQSSSFQNEASYRRKDHLTCHLLQHQGKTFKCPIENCNLDFSLQSNLKRHVNEFHHDNSTSTTCVESQKQYVCPEIGCGKVFRFASRLRKHEDSHVNLESVDVVCLEPGCMKHFTNAQCLRAHVNSCHQYETCGTCGTKQLKKNIKRHLNTHESSSSSETFKCEFKGCDCTFSSKSNLHKHEKVVHFKEKPFVCGFDGCGMRFAYKHVRDNHEKTGKHVFTLGDFEEADEEFRSRPRGGKKRKYPTVEIIVRKRVTPPSQLENWLLMQDSEEDVH* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02298 296 SUPERFAMILY beta-beta-alpha zinc fingers 165 219 IPR036236 -
Rops2g02298 296 ProSitePatterns Zinc finger C2H2 type domain signature. 184 207 IPR013087 -
Rops2g02298 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 212 IPR013087 -
Rops2g02298 296 MobiDBLite consensus disorder prediction 1 29 - -
Rops2g02298 296 ProSitePatterns Zinc finger C2H2 type domain signature. 215 239 IPR013087 -
Rops2g02298 296 MobiDBLite consensus disorder prediction 10 29 - -
Rops2g02298 296 SUPERFAMILY beta-beta-alpha zinc fingers 49 77 IPR036236 -
Rops2g02298 296 Gene3D Classic Zinc Finger 211 239 - -
Rops2g02298 296 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Rops2g02298 296 ProSitePatterns Zinc finger C2H2 type domain signature. 126 149 IPR013087 -
Rops2g02298 296 PANTHER ZINC FINGER PROTEIN 28 282 - -
Rops2g02298 296 SUPERFAMILY beta-beta-alpha zinc fingers 89 116 IPR036236 -
Rops2g02298 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 81 IPR013087 -
Rops2g02298 296 Gene3D Classic Zinc Finger 85 153 - -
Rops2g02298 296 SMART c2h2final6 152 173 IPR013087 -
Rops2g02298 296 SMART c2h2final6 213 239 IPR013087 -
Rops2g02298 296 SMART c2h2final6 51 76 IPR013087 -
Rops2g02298 296 SMART c2h2final6 182 207 IPR013087 -
Rops2g02298 296 SMART c2h2final6 124 149 IPR013087 -
Rops2g02298 296 SMART c2h2final6 92 116 IPR013087 -
Rops2g02298 296 Gene3D Classic Zinc Finger 48 77 - -
Rops2g02298 296 Pfam Zinc finger, C2H2 type 51 76 IPR013087 -
Rops2g02298 296 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Rops2g02298 296 Pfam Zinc finger, C2H2 type 182 207 IPR013087 -
Rops2g02298 296 ProSitePatterns Zinc finger C2H2 type domain signature. 53 77 IPR013087 -
Rops2g02298 296 Gene3D Classic Zinc Finger 155 210 - -
Rops2g02298 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02298 Rops-Chr2 36831300 36832669 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02298 31 242 C2H2 Transcription Factor Family AT1G72050 49.049 1.23e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g02298 zf-C2H2 0.0036 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02298 K09191 - gmx:100801812 447.588