Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02297 ATGTCCTCTTATTCGTTTTCCCCAACCAGTCTCACCACCGAGCAAGAACTCTCCGTCATCGTCGCCGCCCTCACCAACGTTGTCTCCGGTTCCACCTCCACCGCTGCGGATACGGTAACTGAATGTCGCCTGCCTGAGCCTGACATCGGTACTAGCTTTGATCGGATAGTGCCACCGGCGGCGAACATGGAGACTTGTCGTGAATGCAACATAGCGGGGTGTTTGGGGTGTAATTTTTTCCCTGAAGAGAATAATAACAACAACAAGAAGCAGAAGAGAGCGAAGAAGAAGTACAGGGGTGTGAGGCAGAGGCCATGGGGGAAATGGGCAGCGGAGATTCGTGACCCGAGACGCGCCGTCCGTGTTTGGCTCGGAACCTTCAGCACTGCGGAGGAAGCCGCCATGGCTTACGACAAAGCCGCCACCGAGTTCCGAGGACCGAGAGCGAAGCTCAATTTTCCTCTTGTGGATGAGTCTCTGAGTTTGCAGCATGCTGAGAAAGAAAAGGTTGTTACCACAGAGCATATAAAAGATGAGAATATGAATCAGGGAATGGAAATGGACACAGTGGGATTTGGTAATAAGGATAATGAATTCTGGGATAGGATTGGTGAAGCTGATTTTCAGCAACTCATGATGATGATGGATTTTGCTGGAGATTCTTCTGACTCTGCCACCGGGAACACTTTTAGTTCTTGA 699 0.5036 MSSYSFSPTSLTTEQELSVIVAALTNVVSGSTSTAADTVTECRLPEPDIGTSFDRIVPPAANMETCRECNIAGCLGCNFFPEENNNNNKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAVRVWLGTFSTAEEAAMAYDKAATEFRGPRAKLNFPLVDESLSLQHAEKEKVVTTEHIKDENMNQGMEMDTVGFGNKDNEFWDRIGEADFQQLMMMMDFAGDSSDSATGNTFSS* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02297 232 Coils Coil 231 232 - -
Rops2g02297 232 SUPERFAMILY DNA-binding domain 97 155 IPR016177 GO:0003677
Rops2g02297 232 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Rops2g02297 232 FunFam Ethylene-responsive transcription factor 2 96 155 - -
Rops2g02297 232 Pfam AP2 domain 97 146 IPR001471 GO:0003700|GO:0006355
Rops2g02297 232 SMART rav1_2 97 160 IPR001471 GO:0003700|GO:0006355
Rops2g02297 232 CDD AP2 98 154 IPR001471 GO:0003700|GO:0006355
Rops2g02297 232 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Rops2g02297 232 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Rops2g02297 232 ProSiteProfiles AP2/ERF domain profile. 97 154 IPR001471 GO:0003700|GO:0006355
Rops2g02297 232 PANTHER DNA-BINDING DOMAIN 84 170 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02297 Rops-Chr2 36770735 36771587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02297 11 162 AP2-EREBP Transcription Factor Family AT4G34410 47.872 3.43e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops2g02297 AP2 3.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02297 - - gsj:114420690 310.457