Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02275 ATGGCTCAACAAAGTAACAGTGCCGATCTGAATCCACATCCTCAACAGAACCAGCAGCAACAGTGGACACAGCCGCATCAGTATCAGCAACAATGGATGGCCATGCAGTATCCTGCAACTGCCATGGCCATGATGCAACAACAGATGATGATGTATCCTCAGCATTACATGCCTTATGTACATCATCATTATCAGCCGCCGACGCAGGTGCCGCCACAGCACCATAACCACCAGCAACAGCAGAAGCAACAAGTCTCCTCCGATGAGATCAGGACGATCTGGCTCGGTGACCTTCACCATTGGATGGATGAGAACTACCTTCATAACTGCTTCGCTCACACCGGCGAGGTTGTATCAGCCAAGGTGATACGAAATAAGCAAACTGGTCAGTCAGAGGGATATGGATTTGTGGAGTTTTTTTCACGGGCAACGGCTGAGAAAGTCTTGCAGAACTATAATGGTACTATGATGCCAAATACAGATCAGGCATTTCGTCTGAATTGGGCTACATTCAGCGCTGGTGAAAGGCGTTCTGATGCTACTTCTGATCTCTCTATATTTGTGGGGGACTTGGCTATTGATGTTACTGATGCTATGCTGCAAGAGACTTTTGCTAGCAGATATTCATCTATTAAGGGAGCAAAAGTTGTCATCGATTCTAATACTGGCCGTTCAAAAGGCTATGGTTTTGTTAGGTTTGGTGATGAAAATGAAAGGACAAGGGCAATGACTGAAATGAATGGTGTTTATTGTTCTAGTAGGCCTATGCGAATAGGTGTTGCAACACCCAAGAAAACTTATGGCTTTCAACAACAATATTCTTCACAAGCTGTGGTGTTGGCTGGTGGACACTCATCTAATGGTGTTGTGGCCCAGGGTTCCCAGTCTGAAGGGGACTCTAACAACACAACTATATTTGTTGGAGGGCTTGATTCTGATATCAGTGATGAGGATCTCAGACAGCCATTTTTGCAATTTGGCGATGTTGTCTCTGTGAAAATTCCAGTGGGTAAAGGGTGTGGTTTTGTTCAATTTGCTGACAGAAAGAATGCTGAGGAAGCAATTCAGGCATTGACTGGAACGGTAATTGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAATAAGCATTGGAGGACTGATTCCAATGGAAGCCATTACGGTGGTCAGGGTTATGGAGGCCATTTTGCTGCAAGACAGAATCAGGATATTGCTATGCATGTTGCTGCTGCAATTCAAGGGGCTTCCTAA 1260 0.4563 MAQQSNSADLNPHPQQNQQQQWTQPHQYQQQWMAMQYPATAMAMMQQQMMMYPQHYMPYVHHHYQPPTQVPPQHHNHQQQQKQQVSSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTGQSEGYGFVEFFSRATAEKVLQNYNGTMMPNTDQAFRLNWATFSAGERRSDATSDLSIFVGDLAIDVTDAMLQETFASRYSSIKGAKVVIDSNTGRSKGYGFVRFGDENERTRAMTEMNGVYCSSRPMRIGVATPKKTYGFQQQYSSQAVVLAGGHSSNGVVAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVVSVKIPVGKGCGFVQFADRKNAEEAIQALTGTVIGKQTVRLSWGRSPGNKHWRTDSNGSHYGGQGYGGHFAARQNQDIAMHVAAAIQGAS* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02275 419 Gene3D - 284 407 IPR012677 -
Rops2g02275 419 SUPERFAMILY RNA-binding domain, RBD 59 171 IPR035979 GO:0003676
Rops2g02275 419 FunFam Polyadenylate-binding protein RBP47B 90 170 - -
Rops2g02275 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 368 IPR000504 GO:0003723
Rops2g02275 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 160 IPR000504 GO:0003723
Rops2g02275 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Rops2g02275 419 CDD RRM2_SECp43_like 183 262 - -
Rops2g02275 419 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 79 379 - -
Rops2g02275 419 CDD RRM1_SECp43_like 92 172 - -
Rops2g02275 419 SUPERFAMILY RNA-binding domain, RBD 293 399 IPR035979 GO:0003676
Rops2g02275 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 263 IPR000504 GO:0003723
Rops2g02275 419 MobiDBLite consensus disorder prediction 63 87 - -
Rops2g02275 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 171 IPR000504 GO:0003723
Rops2g02275 419 MobiDBLite consensus disorder prediction 69 87 - -
Rops2g02275 419 FunFam Polyadenylate-binding protein RBP47B 172 274 - -
Rops2g02275 419 MobiDBLite consensus disorder prediction 1 24 - -
Rops2g02275 419 FunFam Polyadenylate-binding protein RBP47 285 401 - -
Rops2g02275 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 375 IPR000504 GO:0003723
Rops2g02275 419 SUPERFAMILY RNA-binding domain, RBD 178 283 IPR035979 GO:0003676
Rops2g02275 419 Gene3D - 45 175 IPR012677 -
Rops2g02275 419 Gene3D - 176 277 IPR012677 -
Rops2g02275 419 SMART rrm1_1 185 259 IPR000504 GO:0003723
Rops2g02275 419 SMART rrm1_1 92 167 IPR000504 GO:0003723
Rops2g02275 419 SMART rrm1_1 304 371 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02275 Rops-Chr2 36344222 36348550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02275 93 382 Eukaryotic Initiation Factors Gene Family AT4G34110 30.169 3.97e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02275 - - gmx:100798089 639.032