LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g02270	ATGGGGGTTTGCACTTCGAAGCCGCAAAAGCCGAACCCATACGCGGTTAGGGAACCTGAAGGTGACCTTTCACAAATCCCGAAAACCCCACTAAGTCCCGACGGTAACAACCGTCGCCGGAAAGATGACGTCGTTGCCGGAAAACAGTCTCCGTTCTTCCCTTTCTACAGTCCCAGCCCCGCTCGCTTCCTGAAGAAGTCTCCGGCGACGGGGGGAGGGAGCAAGAGCGCAAGCTCGACGCCGAGGAGGTTTTTCCGGCGACCTTTCCCTCCGCCGTCTCCGGCGAAGCATATAAGGGCGGTGTTGGCCAAGAGGCAGGGGAAGAAGGCCGCCGCGGCAGCAATACCGGAAGAGGCGGAGGCAGCGGCGGCCGGAGGTGCGGGGGATTTGGACAAGAGGTTTGGGTTCTCTAAGGAGTTCAGTAACAAGCTTGAGATTGGTGAAGAAGTGGGTAGAGGGCATTTTGGGTATACTTGTACTGCTAGGTTCAAGAAGGGTGAGCTTAAGGGTCAACAAGTGGCTGTAAAGGTCATTCCAAAAGCAAAGATGACAACAGCAATTGCAATTGAAGATGTGAGAAGGGAGGTGAAAATATTGCGAGCTTTGAATGGGCACCGCAATCTGGTAAAATTCTATGATGCATTTGAAGACCAAGAAAATGTCTACATTGTAATGGAGTTATGTGAAGGGGGGGAGCTTTTAGATATGATACTATCGAGAGGAGGGAAATACTCAGAAGATGAGGCAAAGGCTGTCATTGTACAGATATTAAATGTTGTTGCATTTTGTCATCTTCAGGGTGTGGTGCACCGAGATCTTAAGCCTGAGAATTTTTTGTATACTTCAAAGGATGAAAGTTCTGAGTTAAAGGCAATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGACATCGTTGGAAGTGCGTACTATGTGGCCCCTGAAGTTCTCCATAGATCTTATACCACCGAGGCTGATGTGTGGAGTATAGGCGTGATAGCATATATTCTGTTATGTGGTAGTCGCCCATTTTGGGCTCGAACAGAGTCTGGTATTTTTAGGGCAGTGTTGAAAGCTGAGCCAAGCTTTGATGAAGCTCCCTGGCCATCTTTATCTTCAGAAGCTAGAGATTTTGTCAAACGCCTATTGAATAAGGACCCACGGAAGCGAATATCTGCTGCTCAGGCTCTAAGTCATCCTTGGATAAGGAATTACAGTAATGTAAAAGTTCCACTTGATATTTTAATATTTAAGCTCATGAAGGCTTATATGAGATCATCGTCCTTGCGTAAGGCTGCCTTAAGGGCCTTGTCAAAGACATTGACTGCTGATGAACTCTATTATCTGAGAGAGCAATTTGCACTGTTGGAACCTAGCAAAAATGGCAGCATATCCTTTGACAACATTAGCAAGGCCTTGATGAAACATGCAACAGATGCCATGAAAGAGTCTCGCATCTCTGACTTTCTTTCCTCGCTGAATTCATTACAATATAGAAGGATGGATTTTGAAGAATTTTGTGCAGCTGCATTAAGCGTGCATCAACTTGAAGCTCTAGATCGTTGGGAACAACATGCCCGCTGTGCATATGAACTTTTTGAGAAAGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCAGAACTTGGACTTGGTCCTTCTATCCCTGTTCATGTTGTTCTTCTTGACTGGATACGCCACACTGATGGGAAGTTAAGCTTTCTTGGGTTTGTCAAATTATTACATGGTGTATCTAGCCGAAGCCTCGCAAAGGTTCAGTGA	1797	0.4602	MGVCTSKPQKPNPYAVREPEGDLSQIPKTPLSPDGNNRRRKDDVVAGKQSPFFPFYSPSPARFLKKSPATGGGSKSASSTPRRFFRRPFPPPSPAKHIRAVLAKRQGKKAAAAAIPEEAEAAAAGGAGDLDKRFGFSKEFSNKLEIGEEVGRGHFGYTCTARFKKGELKGQQVAVKVIPKAKMTTAIAIEDVRREVKILRALNGHRNLVKFYDAFEDQENVYIVMELCEGGELLDMILSRGGKYSEDEAKAVIVQILNVVAFCHLQGVVHRDLKPENFLYTSKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYTTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKAEPSFDEAPWPSLSSEARDFVKRLLNKDPRKRISAAQALSHPWIRNYSNVKVPLDILIFKLMKAYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISFDNISKALMKHATDAMKESRISDFLSSLNSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSIPVHVVLLDWIRHTDGKLSFLGFVKLLHGVSSRSLAKVQ*	599

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g02270	598	FunFam	CDPK-related kinase 1	442	515	-	-
	Rops2g02270	598	CDD	STKc_CAMK	145	405	-	-
	Rops2g02270	598	FunFam	CDPK-related kinase 3	136	308	-	-
	Rops2g02270	598	Gene3D	-	424	585	-	-
	Rops2g02270	598	Gene3D	Transferase(Phosphotransferase) domain 1	233	418	-	-
	Rops2g02270	598	SUPERFAMILY	EF-hand	434	588	IPR011992	-
	Rops2g02270	598	SUPERFAMILY	Protein kinase-like (PK-like)	142	443	IPR011009	-
	Rops2g02270	598	FunFam	Calcium-dependent protein kinase SK5	316	412	-	-
	Rops2g02270	598	Gene3D	Phosphorylase Kinase; domain 1	146	232	-	-
	Rops2g02270	598	ProSitePatterns	Protein kinases ATP-binding region signature.	150	176	IPR017441	GO:0005524
	Rops2g02270	598	Gene3D	-	446	515	-	-
	Rops2g02270	598	PANTHER	SERINE/THREONINE-PROTEIN KINASE	129	566	-	-
	Rops2g02270	598	SMART	serkin_6	144	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g02270	598	FunFam	CDPK-related kinase 1	137	232	-	-
	Rops2g02270	598	Pfam	Protein kinase domain	145	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g02270	598	ProSiteProfiles	Protein kinase domain profile.	144	406	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g02270	598	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	268	280	IPR008271	GO:0004672\|GO:0006468
	Rops2g02270	598	MobiDBLite	consensus disorder prediction	1	95	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g02270	Rops-Chr2	36306195	36311780	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g02270	1	594	EF-hand Containing Proteins	AT3G50530	71.949	0.0	920

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Rops2g02270		Pkinase	2.8e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g02270	-		K00924	gmx:100798913	1023.85