Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02265 ATGGGTTCGGTTCCTGCAGAACTGAGCTTGGATTTGAGACCCTGTTTTGTTCCCAAAACCATTTCTGATTTTCTCTATGACCTCTCCACCATCCCAGCTTTTTCCGATAAGCTTTCAAGCCTCAACGATTTCCTCTCTCGTTTGGAAGATGAACTCAGAAAGATCGACGCTTTCAAACGCGAGCTTCCTCTCAGCATGCTCCTCTTAAACGACGCAATTTTAGTTTTGAAGGAGGAATCGGAGAAATGCAGGCCTAAAATTTCTCTGCCAGTGTTGGAAGAGTTTATTCCCTTGAAGAAAGAGCATGATCAGAGTGAGGAAAATAATAACAAGGACAATGAATCCAGAGACAAGAAGAATTGGATGAGTTCTGTTCAGCTCTGGAACAATACTACCACTAATAATAATGCCTGTGATCAAAAACAACATCTTAATAAATTAGAATCCAAGAAAAGTGAAGAAGAAGGGCAATCTGTGGCTGAGGACCCTTTCCAATCTTGTAGTAATAGAAATGGAGCAAGTGCTTTTATGCCTTTCTCCACATACACTTCTGTCCCTGTGACAACAGTGGCACTGACAACAGCAATTACCAAAGAAGAGAAGGAAGACACTGCTATGGATAGACTCTCTCTTCTGACCCCTGGAGTGAAAAGCTTGAGGGAAGGATTTGGTTCAAGGGGATCCAGAACAAGCTCCAACAGGGCAGCTTCTTCCTCTCCTCCTACTATGCAGCCAAGTTTGCGTGCAGGACCACTTCAGCAGCAGCAGACTGCTAGGAAACAAAGGAGATGCTGGTCGCCGGAGTTGCATCGTCGATTTGTTAATGCCTTGCAGAAGCTTGGAGGTTCTCAAGCGGCAACACCTAAGCAAATTAGGGAACTCATGCAGGTTGATGGCCTGACAAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGACTTCATACAAGGAGAGTTCCAGCTACAACTTCTAATCAACCTATGGTAGTTCTTGGAGGTTTGTGGATGTCTCAAGATCAGTACAATGACTCTTCAAAGGGTAGCAGTTCAGGGTCTGGTTCTCCACAAAGTCCCCTTCATTTAGCCACAGGATCTCGTGGAGGGACATCCCCAACTGAGGGTGACAGTATGGAAGATGATGAAGATGCAAAATCTGAGAGTTATAGCTGGAAAAGTCACATCCACAAACCTGGAAAAGTTGATGTATAG 1209 0.4425 MGSVPAELSLDLRPCFVPKTISDFLYDLSTIPAFSDKLSSLNDFLSRLEDELRKIDAFKRELPLSMLLLNDAILVLKEESEKCRPKISLPVLEEFIPLKKEHDQSEENNNKDNESRDKKNWMSSVQLWNNTTTNNNACDQKQHLNKLESKKSEEEGQSVAEDPFQSCSNRNGASAFMPFSTYTSVPVTTVALTTAITKEEKEDTAMDRLSLLTPGVKSLREGFGSRGSRTSSNRAASSSPPTMQPSLRAGPLQQQQTARKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPATTSNQPMVVLGGLWMSQDQYNDSSKGSSSGSGSPQSPLHLATGSRGGTSPTEGDSMEDDEDAKSESYSWKSHIHKPGKVDV* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02265 402 MobiDBLite consensus disorder prediction 147 169 - -
Rops2g02265 402 MobiDBLite consensus disorder prediction 383 402 - -
Rops2g02265 402 Coils Coil 41 61 - -
Rops2g02265 402 NCBIfam myb-like DNA-binding domain, SHAQKYF class 260 315 IPR006447 GO:0003677
Rops2g02265 402 MobiDBLite consensus disorder prediction 100 120 - -
Rops2g02265 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 257 317 IPR017930 -
Rops2g02265 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 392 IPR044787 GO:0003700|GO:0006355
Rops2g02265 402 Pfam Myb-like DNA-binding domain 262 313 IPR001005 -
Rops2g02265 402 SUPERFAMILY Homeodomain-like 257 318 IPR009057 -
Rops2g02265 402 Gene3D - 259 317 - -
Rops2g02265 402 MobiDBLite consensus disorder prediction 340 402 - -
Rops2g02265 402 MobiDBLite consensus disorder prediction 224 258 - -
Rops2g02265 402 MobiDBLite consensus disorder prediction 218 258 - -
Rops2g02265 402 FunFam Myb family transcription factor 259 317 - -
Rops2g02265 402 MobiDBLite consensus disorder prediction 340 372 - -
Rops2g02265 402 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02265 Rops-Chr2 36174269 36177062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02265 6 336 G2-like Transcription Factor Family AT2G03500 41.292 4.47e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops2g02265 Myb_DNA-binding 3.6e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02265 - - mtr:25493035 563.148