Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02245 ATGGTGGATGACTTCATTGTTTGCATTGATCGGATTATATCCTCCACGGCTTGTTTTGGTTCAGTTGGTGAAGCAGAAGATGGAAGAGACTGTGATGGGGTGCTTCATGTTGACCCTTTACCTGTTTCTAACAATGGTGGAGAAGAAGAAGAACAAGGGTGTTCGTCTTCTTCAAGCAAGGATGATCTTGTTGAGTGCAGAATATGTCAGGAAGAGGATAAAGTTCAAGCCTTGGAGACCCCTTGTTCCTGTAATGGCACTCTCAAGTTCGCTCATAGGAAGTGTATCCAAAAATGGTGCAACAAGAAAGGAAATACGATATGTGAAATCTGTAATGAGGTATTTTCACCAAATTATTCTCTTCCACCAATCAGAAGCAATGACATAATGACAATTGATATAAGGCAAGAATGGGGGCATAATACTGATCTCCATGTGGCTCTAGCTTCAGCAGAGCGCCAGTTGCTGCAAACTGAGTATGAAGATTATGCCATTATGCAAACCAGTAGCATTGGTTGTCTTCGCTCTGCTACTCTCATTCTGGTGATAATTTTGCTTGTACGCCAAGCTTTAATGGTCACAAAGAACTCTGCAATTGGGCAAGACTCATCAACAATCTTTAATTTTCGGATGTCACTCCTTCAATTTGCCGGTGTTCTTTTGCCATGTTGTGCAATGGCACGTTCTTGGTACATCATACAGAACCGAAGGAGAAGACAGGGTTGA 726 0.4215 MVDDFIVCIDRIISSTACFGSVGEAEDGRDCDGVLHVDPLPVSNNGGEEEEQGCSSSSSKDDLVECRICQEEDKVQALETPCSCNGTLKFAHRKCIQKWCNKKGNTICEICNEVFSPNYSLPPIRSNDIMTIDIRQEWGHNTDLHVALASAERQLLQTEYEDYAIMQTSSIGCLRSATLILVIILLVRQALMVTKNSAIGQDSSTIFNFRMSLLQFAGVLLPCCAMARSWYIIQNRRRRQG* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02245 241 Pfam RING-variant domain 66 111 IPR011016 GO:0008270
Rops2g02245 241 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 240 IPR033275 -
Rops2g02245 241 CDD RING_CH-C4HC3_MARCH 66 112 - -
Rops2g02245 241 SUPERFAMILY RING/U-box 63 115 - -
Rops2g02245 241 ProSiteProfiles Zinc finger RING-CH-type profile. 58 118 IPR011016 GO:0008270
Rops2g02245 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 117 IPR013083 -
Rops2g02245 241 SMART ringv_2 65 112 IPR011016 GO:0008270
Rops2g02245 241 Pfam Protein of unknown function (DUF3675) 117 230 IPR022143 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02245 Rops-Chr2 35833121 35839146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02245 65 114 C3H Transcription Factor Family AT2G37950 43.396 2.78e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02245 - - gmx:100812120 365.155