LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g02243	ATGATAGCCAGTTCCTTCTGCAATGCCGATTCTATGTTTTCAAGAGAAGAGGGGATAGATGTTAGAAAGATGATGGGACATAAAAGGAGGCCCTGCTCTGTTGATCAAAGCAGTTATACTTCTATTGCTTCTAAAAAGCAGAAGAATGATTTATCAATCAGCACCAAGGATAGGAAGGAAAAGCTTGGTGAACGAATTGTTGCTCTTCAGCAGCTTGTTTCACCATATGGAAAGACAGATACATCTTCTGTTCTAAAGGAGGCAATGGACTACATAGGATTCCTTCATAAACAAGTTAAGCTGCTCAGTGCTCCTTACCTCGAGAGTTCACCGACAACGCAGATGCAGGGTATAGAGCCATGCAGCTTGAGGAGTAGAGGTTTATGTCTTGTTCCTGTCTCATTTACTATTGGAGTTTCTGAGAGCAATGGTGCAGATATCTGGGCTCCCATCAAGACAACTTCACCTAAATTTGATAAGGATGTCTCACAATTTCATTGA	501	0.4152	MIASSFCNADSMFSREEGIDVRKMMGHKRRPCSVDQSSYTSIASKKQKNDLSISTKDRKEKLGERIVALQQLVSPYGKTDTSSVLKEAMDYIGFLHKQVKLLSAPYLESSPTTQMQGIEPCSLRSRGLCLVPVSFTIGVSESNGADIWAPIKTTSPKFDKDVSQFH*	167

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g02243	166	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	52	112	IPR036638	GO:0046983
	Rops2g02243	166	Gene3D	-	43	115	IPR036638	GO:0046983
	Rops2g02243	166	FunFam	Transcription factor bHLH113 family	45	120	-	-
	Rops2g02243	166	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	46	136	-	-
	Rops2g02243	166	SMART	finulus	52	101	IPR011598	GO:0046983
	Rops2g02243	166	CDD	bHLH_AtbHLH_like	52	103	IPR045239	-
	Rops2g02243	166	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	46	95	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g02243	Rops-Chr2	35799461	35804910	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g02243	24	158	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT1G05710	52.532	2.67e-49	154

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g02243	-		-	gmx:100527660	304.679

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