Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02241 ATGGATTTCGCTCTCTTCGGTTTTCTCTTTCCGTCTCTTTGGGAGATCGAAGTCGCGCTCGCCGCTTCCGTCTTCGTCATCCTCGCCTATCGGTTCTTCTCCTCCAGAACCGGTGACCTCGACGCCGATCCATCGCTTTATGACAATTCCGCCGCCGCCGATGCTACCGACGACAAGATCAGCCAGTTGAGAGGAGATTCTCAAGCCAGTTCGGCATACCTGATCAAGTTAGAACTATTGGCTGCTAAAAATCTCATTGCTGCAAACTTAAATGGCACATCAGATCCTTATGCTATCATCACATGTGGCAATGAAAAGCGATTCAGTTCCATGGTCCCTGGTTCGAGAAATCCTATGTGGGGTGAGGAGTTCAATTTTTCTGTCGATGAACTTCCTGTCCAGATCAATGTCACAATTTATGATTGGGATATAATTTGGAAAAGTGCTGTTCTTGGTTCAGTGACTGTTCCAGTTGAAAGTGAAGGTCAAACTGGTGCAGTGTGGCATACTTTGGATAGCCCATCAGGGCAGGTTTGTCTTCATATAAAAACAAGAAAACTACCTGCAAATTCTGCCAGGACAAATGGTTATGGTGGAGCCAACACTCGAAGAAGGATGCCCTTGGAAAAAGAGGGGCCCACTGTGGTTCATCAAAAGCCAGGGCTTCTTCAAACAATATTTGATCTTTTTCCAGATGAGGTTGTTGATCATAGCTATTCTTGTGCACTTGAGAGGTCATTCTTATATCATGGTCGTATGTATGTCTCAGCATGGCACATTTGTTTCCATTCCAATGTGTTTTCAAAGCAAATGAAGGTGGTTATTCCATTTGAAGATATAGATGAGATTCGAAGGAGTCAACATGCATTTATTAATCCTGCTATAACAATTATTCTTCGTTTGGGTGCTGGTGGACATGGTGTCCCTCCTTTGGGAAGTCCTGATGGTAGAGTCAGATATAAGTTTGCATCATTTTGGAACAGGAATCATGCACTCAGAAATCTACAACGTGCATTAAATATTTTCCATGAAATGTTGGAAGCTGAGAAGAAGGAAAATGCAGAGTCAGAATTGCGTGCACATAGCAGTTCTGTTAAACGAATTAAGATACCGGATAAGGTTCCTGAAGCTAGCATGCCAAAAATTGGAAAGCTTCAACCTTTTACCAAAGAAGAGGCTTTAGTTGGTATATACAATGATGTTTTTCCCTGCACAGCCGAGCAGTTTTTTAATTTATTATTAAATGATGGTTCAGAATTTACTAGCAAGTATCGTTCAGTACGAAAGGATTCTAATCTTGTGATGGGACAGTGGCATACAGCAGACGAATATGATGGTCAAGTCCGAGAAATAACCTTCAGATCCCTTTGTAACAGCCCTATGTGCCCTCCAGACACAGCCATGACAGAGTGGCAACATGTTGTTCTATCACCAGACAAGAAAAATCTGGTGTTTGAGACCGTGCAACAGGCACATGATGTTCCATTTGGGTCTTATTTTGAGGTACACTGTAAATGGAGTTTGGAGACAACTAATGGAAGTTCATGTACTCTGGACATAAAAGTGGGTGCACATTTCAAGAAATGGTGTGTGATGCAATCGAAAATAAAGTCAGGGGCAGTCAATGAGTACAAGAAAGAAGTTGAGGTGATGCTAGATGTTGCTCGTTCATATATAAAGTCGCATACTTCTGACGAGGAGAATAATAAGGCCTCTTCGTCTCCTGGGGCAACTCCGGAAAATTAA 1746 0.4244 MDFALFGFLFPSLWEIEVALAASVFVILAYRFFSSRTGDLDADPSLYDNSAAADATDDKISQLRGDSQASSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGNEKRFSSMVPGSRNPMWGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLHIKTRKLPANSARTNGYGGANTRRRMPLEKEGPTVVHQKPGLLQTIFDLFPDEVVDHSYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITIILRLGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRNLQRALNIFHEMLEAEKKENAESELRAHSSSVKRIKIPDKVPEASMPKIGKLQPFTKEEALVGIYNDVFPCTAEQFFNLLLNDGSEFTSKYRSVRKDSNLVMGQWHTADEYDGQVREITFRSLCNSPMCPPDTAMTEWQHVVLSPDKKNLVFETVQQAHDVPFGSYFEVHCKWSLETTNGSSCTLDIKVGAHFKKWCVMQSKIKSGAVNEYKKEVEVMLDVARSYIKSHTSDEENNKASSSPGATPEN* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02241 581 Gene3D - 222 340 IPR011993 -
Rops2g02241 581 SMART C2_3c 74 170 IPR000008 -
Rops2g02241 581 Pfam GRAM domain 224 290 IPR004182 -
Rops2g02241 581 Gene3D C2 domain 59 185 IPR035892 -
Rops2g02241 581 Pfam VAD1 Analog of StAR-related lipid transfer domain 397 542 IPR031968 -
Rops2g02241 581 MobiDBLite consensus disorder prediction 561 581 - -
Rops2g02241 581 Pfam C2 domain 76 170 IPR000008 -
Rops2g02241 581 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 73 183 IPR035892 -
Rops2g02241 581 SMART gram2001c 221 287 IPR004182 -
Rops2g02241 581 Coils Coil 332 352 - -
Rops2g02241 581 ProSiteProfiles C2 domain profile. 54 171 IPR000008 -
Rops2g02241 581 ProSiteProfiles VASt domain profile. 393 563 IPR031968 -
Rops2g02241 581 CDD C2 75 171 - -
Rops2g02241 581 FunFam BAG-associated GRAM protein 1 isoform X2 222 341 - -
Rops2g02241 581 PRINTS C2 domain signature 114 127 IPR000008 -
Rops2g02241 581 PRINTS C2 domain signature 90 102 IPR000008 -
Rops2g02241 581 PRINTS C2 domain signature 135 143 IPR000008 -
Rops2g02241 581 PANTHER BAG-ASSOCIATED GRAM PROTEIN 1 4 574 IPR044655 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02241 Rops-Chr2 35771702 35793837 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02241 74 159 C2H2 Transcription Factor Family AT4G21160 25.581 1.49e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02241 - - tpra:123924252 1030.78