Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02226 ATGGTTTATGACAAAAATTCTTCATCTGGTTCTGATGGTTCAAGGCTGTTCAATCCCACTTTTCATAGCCTTGGAGCTTCAAATGGTGTTTCACAAGGTGGGGTGTCATCATCACCTATATTGGTTTCAGAGAGTGAGAATGGAGAACTGGTGAAGTGCCCTGCAACTGCAAGGATAGGAAAGAATGAGATTTTTGAGGCCAAAGCTTTAGCTGCTTTGAAGAGCCATAGTGAAGCAGAGAGGAGGAGGAGGGAGAGAATAAATGGTCATCTTGAAACTCTACGTGGTCTGGTATCCTCCACTGAAAAGATGGATAAAGCCACATTACTGGCTGAAGTTATTAGCCAAGTGAAGGAATTGAAGAAGAATGCAGTGGAAGCAAGCAAAGGTTTTCTCATCCCAACGGATGCTGATGAAGTGAAAGTTGAACCATATGAAGATGAAGGAGGAGATGGATCCATGTCTTATGTGGCAACTATTTGCTGTGATTACAGACCTGAGATACTATCTGACCTAAGACAGACACTTGATGCCCTTCAGCTACAACAGGTGAAGGCAGAAATATCAACATTGGGAAGCAGGATGAAGAATGTGTTTGTCTTTACATGTTGCAAAGGTGACAATGTTAATTTTGAGGCATGCCAAGCTCTTGCAATCAATGTTCACCAGGCACTAGATTCTGTGCTGGAAAAGGCTTCTAACTCACTGGAGTTCTCACTCAGAACTTCACATCCAAGCAAGAGGAGAAGACTATGCTTTATTGAAACATCTACTTCCTCTTGCCACCATGGATCTTGTTCATGCTGA 807 0.4263 MVYDKNSSSGSDGSRLFNPTFHSLGASNGVSQGGVSSSPILVSESENGELVKCPATARIGKNEIFEAKALAALKSHSEAERRRRERINGHLETLRGLVSSTEKMDKATLLAEVISQVKELKKNAVEASKGFLIPTDADEVKVEPYEDEGGDGSMSYVATICCDYRPEILSDLRQTLDALQLQQVKAEISTLGSRMKNVFVFTCCKGDNVNFEACQALAINVHQALDSVLEKASNSLEFSLRTSHPSKRRRLCFIETSTSSCHHGSCSC* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02226 268 Pfam Helix-loop-helix DNA-binding domain 75 120 IPR011598 GO:0046983
Rops2g02226 268 CDD ACT_UUR-ACR-like 159 217 - -
Rops2g02226 268 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 75 122 IPR036638 GO:0046983
Rops2g02226 268 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 71 120 IPR011598 GO:0046983
Rops2g02226 268 SMART finulus 77 126 IPR011598 GO:0046983
Rops2g02226 268 Gene3D - 68 129 IPR036638 GO:0046983
Rops2g02226 268 PANTHER TRANSCRIPTION FACTOR BHLH30 31 255 IPR045847 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02226 Rops-Chr2 35523611 35526983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02226 57 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 46.734 8.95e-37 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops2g02226 HLH 1.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02226 - - gmx:100804756 368.237