Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02224 ATGGACTTCTCCAAGAAGCGCAAAACTGAAGAGAACGGCGACACCGATTCTCCGCCGCCATCTACCAACACCGCCGCCGCAGCAACCACCACTACCCTCGCCCCAGAAGACATCCGAAGGATCCTCCAACCCTTCACCCAGGAGCAGCTCCTTGGCCTCCTCCAATCGGCCTCCCTCCGCCACCCTGATGTCCTTGACGCCGTTCGTTCCGTCGCCGACCGTGACGCCACCCTCCGCAAACTCTTCGTCCGCGGCCTTGCCGGCGAGACCACCACCGACGCCCTCCGCGGCGTCTTCTCGGCCTATGGTGAACTCGACGAGGCCATCGTGATCTTTGACAAGTCCACCGGCAGGTCCAAGGGCTACGGTTTCGTCGTGTTCAAGCACGTAGACGGCGCAATCCTCGCCCTGAAGGAACCTAGCAAGAAGATCGACGGCAGGATGACGGTGACGCAGCTCGCGGCGGCTGGTTCCGGCGCTTCTGGCGGTGACGTCTCTGCTCGGAAGGTTTTCGTTGGGAACGTTCCGTTCGAAATATCATCGGAGACACTATTAAGTGAGTTCCTTAAATATGGTGAAATCGAAGAAGGTCCTCTAGGGTTTGATAAAGGGAGTGGAAAAACGAGAGGCTTTGCGTTTTTCGTGTATAAAACTGAAGAGGGTGCTAGGGCTTCGTTGGCGGAGCCTCTGAAAACCATTGAAGGCAACCAAGTTATTTGCAAGTTGGCTGTGGATAACAAAAAGCCCAAGCCCGGGACTCACAACAACCCTTCGGGCTTTCCAGAATCTTCTTCTTTGCATGCTCCGAGTTCTATGATGATGCCGCAGTACGGTGCTCCTCCTCCTAATGCTTATGGACCGCCGTTCAGTAATCATGTTCCCTCTGCTGGTGGCTATGGGCCTGGAATTGCTTCCCAGTTCGACCTCCTCCTGGAGGAATGTACCAAGGCGTACCTCCTTATTATTGAGGTGTTTCGTCAGATTTGTGATGGCTTCTTGGGCGCTAATGCTTTAAATGGTTGTGCTGATTTCGTGCATGCAGACAATGAAATCTTTGGTTTTGGTTACATGGACTGCTGTAATTTGTTGCTGCTTCACTACATCTGCTTCTATGTGTTATGGTTCCATTTGTGA 1134 0.5353 MDFSKKRKTEENGDTDSPPPSTNTAAAATTTTLAPEDIRRILQPFTQEQLLGLLQSASLRHPDVLDAVRSVADRDATLRKLFVRGLAGETTTDALRGVFSAYGELDEAIVIFDKSTGRSKGYGFVVFKHVDGAILALKEPSKKIDGRMTVTQLAAAGSGASGGDVSARKVFVGNVPFEISSETLLSEFLKYGEIEEGPLGFDKGSGKTRGFAFFVYKTEEGARASLAEPLKTIEGNQVICKLAVDNKKPKPGTHNNPSGFPESSSLHAPSSMMMPQYGAPPPNAYGPPFSNHVPSAGGYGPGIASQFDLLLEECTKAYLLIIEVFRQICDGFLGANALNGCADFVHADNEIFGFGYMDCCNLLLLHYICFYVLWFHL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02224 377 MobiDBLite consensus disorder prediction 246 265 - -
Rops2g02224 377 Gene3D - 6 164 IPR012677 -
Rops2g02224 377 FunFam UBP1-associated protein 2C isoform A 62 163 - -
Rops2g02224 377 Gene3D - 165 266 IPR012677 -
Rops2g02224 377 SUPERFAMILY RNA-binding domain, RBD 71 154 IPR035979 GO:0003676
Rops2g02224 377 SMART rrm1_1 169 241 IPR000504 GO:0003723
Rops2g02224 377 SMART rrm1_1 80 152 IPR000504 GO:0003723
Rops2g02224 377 PANTHER GEO13361P1-RELATED 58 281 - -
Rops2g02224 377 MobiDBLite consensus disorder prediction 1 26 - -
Rops2g02224 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 234 IPR000504 GO:0003723
Rops2g02224 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 147 IPR000504 GO:0003723
Rops2g02224 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Rops2g02224 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 249 IPR000504 GO:0003723
Rops2g02224 377 MobiDBLite consensus disorder prediction 251 265 - -
Rops2g02224 377 SUPERFAMILY RNA-binding domain, RBD 165 259 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02224 Rops-Chr2 35440488 35442336 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02224 151 252 C2H2 Transcription Factor Family AT2G19380 34.314 3.74e-13 68.9