Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02188 ATGCATTTCCCACTTCAAGCACTTGCAAGTATTTGGCTCTCCTATTTATTCATCTACTTTGTTCTCATCAATGGCTACCAAGCTGAGGCTACAAATGGAGACAACAAAGTTATATCTATAGGTGCAATCGTTGATGTTAACTCTAGCATTGGGAAAGAACAGCGAGTAGCCATGGACATTGCAGCTCAAAGTTACAATAACACTTCAAGGACCTACAAGCTGGCTCTCTATTTTCAGGAACCCACCAAGGATCCCTTCAGAGCCACTTCTCTTGCTGAAGAGATGATTAAAACACAGAAGGTGCAAGTGATTGTAGGGATGCACACATGGACAGAAGCAGCTTCAGTGGCTGAATTAGTGCGCCAAACTCAAGTTCCTATTATATCCTTTGTAGCACCAACGACTACCCCACCATTGATGCCAATTCGCTGGCCTTTTTTGGTGACAATGGCTAACAATGGTACTGCATATGTAAAATGCGTTGTGGATATGGTGCATGCTTATGGTTGGCAGAAAGTAGTAGCCATCTATGAAGATGATGCCTATGGTGGAGATTCTGGGATGCTACCACTTCTATCTGAGGCCCTCCAAGATGTTGGTTCAATGATTGAGTACCGTTTAGCTTTGCCATCACCTACTTATCTACCTAAACCAGGAGAGTTTATTCGTGAAGAGCTGTTTAAGTTAATTGAAAATACACAATCTCGGGTATTCATTGTTCTGCCATCATCCCTGGAAATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTTGTGGATAAAGAATCAGCTTGGATAATACCAGAGAGCATAACTAATTTGCTGGACTCTGTCAATAAGTCAGCTATTTCCCATATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAAAATAGCAGTGAATATCAAGATTTTGAGGCTCGGTTCCGAAGAACTTTTCGGGCCAAGCATCCTGAGGAAGATAACAGCAACGCAGGATTTTATGCTCTGCAAGCATATGACAGCATTAAAATTGTTGCACAGGCAGTGGACAGAATGGCCAGTGGCAATGGTAGTGGCAGAAATACTTTACTAAGAGAAATATTGTCAAGCAATTTCCTTGGTTTAAGTGGAGAAATTCAATTTGAAGCAATGCAGCTCTTGCAGAATCCTATATTGAGGATTGTAAATGTGGATGGGAAGAGTTACAGAGAATTAGACTTCTGGACTCTAGAAAGTGGGTTCATCACTAGCCTCCCCACAAAACAAGGTAGAAATAGTGTTTCTAGGAACACAGAAAGTTTAAATGGCGTAGTGATTTGGCCTGGGAAATTGTTGAGAAGTCCAAAGGGATGGAATCTGCCTACTAAACAAAATCCTATGAAAATTGCAGTCCCTGGAAGAACCTCATTTTCCAAGTTTGTCAAGGTTGATTATGACGAGCATGGAAAACCATATAAATATACTGGATTTTGCATTGAAATTTTTGAGAAGGTCTTAGAACTTTTGGAGTATGATCTACCATATGAATATTATCCTATCAATGGAACCTATCCTGATCTAGTTCAACTTGTCTACGACAAGACTTACGAGGCGGTTGTTGGCGACATGACCATACTGGCAGAGAGAATGCCATATGTAGATTTTACTGTGCCATATTCAGAATCAGGATTGTCAATGATAGTTCCAGAAAAGTCCCAAGAATCTGCATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGTAACTGGTGCCATCTTGACTTACACAATGTTGGTAGTGTGGTACCTGGAGCGGGAACCCAATCCAGAGTTTCATGGCAATTGGAAAAGCCAGATCAGCATTGCTCTTTGGTTTACTTTTTCCTCTCTATTCTTTGCTCATAGGGAGAAAATGCATAGCAACTTATCTCGTATAGTGATGGTATCATGGCTCTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCAAGTCTTTCCTCGATGCTCACAGTTCAAAAACTGCAACCAAGTGTCACAGACATGGAGTGGCTGAAGAAGAACAACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACCTAGAGAAAGTCGAAAAATACAAGCCAACGAACATCATAAACATTAGTAGTGAAATCAATTATGTCAGTGCATTCAAAAACTACTCAATAGCTGCTGCTTTTCTCGAACTCCCTTACGAAAAAGTATACATCAGTAAATACTGCAAGGGGTACTCTGGCTCTACACCAACCACCAGATTTGGAGGACTGGGATTTATGTTCCAGAAAAACTCCCCCGTGGCCAGAGATGTTTCTAAAGCTATTTTGCAGCTCTTAGAGCAGGGAGAAGTGCAGAGGTTAGAAGAGAAATGGTTGAATCCCTCAGGCGAGTGCTCCAACAATTTGACCTCAGAGGGTACAGAAAGTTTGAAGCTTGCAAGTTTCTGGGTCCTTTATGTGATTTCTGGTGCCACTTCTACTATTTGTTTCCTACTTTCTACCATCCATTCGCTAAAATCTAGACAAACACCCCGAGATGAGGAAGGTAATGGCTACCCAAATGATGAGAGCCCGTGGAAAAGGGTGGTTAAATTAACTAAGCAGATTTGTAGCAGAAAGCATAGTAGAGTAGCAAAGGCAGACGAAGATGTTACTGATGGTTCTTCCAGATTTGATATAATCAGTATTGCTGACACCCCTGAGCATCAGCAGGCAATGGCTCTTCAATTACCAGAAATCATAACAGCATCCTCCCCACCATCACATGTGACAACTCCTGATTACTAA 2787 0.4141 MHFPLQALASIWLSYLFIYFVLINGYQAEATNGDNKVISIGAIVDVNSSIGKEQRVAMDIAAQSYNNTSRTYKLALYFQEPTKDPFRATSLAEEMIKTQKVQVIVGMHTWTEAASVAELVRQTQVPIISFVAPTTTPPLMPIRWPFLVTMANNGTAYVKCVVDMVHAYGWQKVVAIYEDDAYGGDSGMLPLLSEALQDVGSMIEYRLALPSPTYLPKPGEFIREELFKLIENTQSRVFIVLPSSLEMVIHLFREASQMGLVDKESAWIIPESITNLLDSVNKSAISHMEGALGIKTYYSENSSEYQDFEARFRRTFRAKHPEEDNSNAGFYALQAYDSIKIVAQAVDRMASGNGSGRNTLLREILSSNFLGLSGEIQFEAMQLLQNPILRIVNVDGKSYRELDFWTLESGFITSLPTKQGRNSVSRNTESLNGVVIWPGKLLRSPKGWNLPTKQNPMKIAVPGRTSFSKFVKVDYDEHGKPYKYTGFCIEIFEKVLELLEYDLPYEYYPINGTYPDLVQLVYDKTYEAVVGDMTILAERMPYVDFTVPYSESGLSMIVPEKSQESAWMFMKPFTWQMWVVTGAILTYTMLVVWYLEREPNPEFHGNWKSQISIALWFTFSSLFFAHREKMHSNLSRIVMVSWLFLVLILNSSYTASLSSMLTVQKLQPSVTDMEWLKKNNMKIGCDGDSFVRTYLEKVEKYKPTNIINISSEINYVSAFKNYSIAAAFLELPYEKVYISKYCKGYSGSTPTTRFGGLGFMFQKNSPVARDVSKAILQLLEQGEVQRLEEKWLNPSGECSNNLTSEGTESLKLASFWVLYVISGATSTICFLLSTIHSLKSRQTPRDEEGNGYPNDESPWKRVVKLTKQICSRKHSRVAKADEDVTDGSSRFDIISIADTPEHQQAMALQLPEIITASSPPSHVTTPDY* 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02188 928 CDD PBP1_GABAb_receptor_plant 39 411 IPR044440 -
Rops2g02188 928 Gene3D - 159 326 - -
Rops2g02188 928 Gene3D - 566 705 - -
Rops2g02188 928 FunFam Glutamate receptor 456 567 - -
Rops2g02188 928 Gene3D - 743 800 - -
Rops2g02188 928 CDD GluR_Plant 455 792 - -
Rops2g02188 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 39 858 IPR015683 -
Rops2g02188 928 SUPERFAMILY Periplasmic binding protein-like II 434 793 - -
Rops2g02188 928 Pfam Bacterial extracellular solute-binding proteins, family 3 483 793 IPR001638 -
Rops2g02188 928 Pfam Ligand-gated ion channel 794 823 IPR001320 GO:0015276|GO:0016020
Rops2g02188 928 Pfam Receptor family ligand binding region 56 396 IPR001828 -
Rops2g02188 928 Gene3D - 467 565 - -
Rops2g02188 928 SMART GluR_14 458 794 IPR001320 GO:0015276|GO:0016020
Rops2g02188 928 FunFam Glutamate receptor 566 704 - -
Rops2g02188 928 SUPERFAMILY Periplasmic binding protein-like I 35 448 IPR028082 -
Rops2g02188 928 FunFam Glutamate receptor 157 326 - -
Rops2g02188 928 PIRSF IGluLR_plant 7 907 IPR017103 -
Rops2g02188 928 Gene3D - 33 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02188 Rops-Chr2 34834937 34838940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02188 14 852 Ion Channels AT2G29120 33.525 7.27e-154 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02188 - - gmx:100780320 1355.89