Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02186 ATGCATTTCCCATCCACTAGTCTTCAAGCACTTGCAAGAATTTGGCTCTCCTATTTATTCATCTACTTTGTTCTCATCAATGGCTACCAAGCTGAGGCTATAGATGGAGACAACAAAGTTATATCCATAGGTGCAATCATTGATGTCAACTCTCGCATTGGGAAAGAACAGCGATTAGCCATGGACATTGCAGCTCAAAGTTACAATAAATCTTCAAAGACCTACAAGCTGGCTCTCTATTTTCAGGAACCCACCAAGGATCCCTTCAGAGCCACTTCTCTTGCTGAAGAGATGACTAAAACACAGAAGGTGCAAGTGATTGTAGGGATGCACACATGGACAGAAGCAGCTTCAGTAGCTGAATTAGTGCGCCAAACTCAAGTTCCTATCATATCCTTTGTAGCACCAACCTCAACCCCACCATTGATGCCAATTCGCTGGCCTTTTTTGGTGACAATGGCTAACAATGGTACTGCATATGTAAAATGCGTAGTGGATATGGTGCATGCTTATGGTTGGCAGAAAGTAGTAGCCATCTATGAAGATGATGCCTATGGTGGAGATTCTGGGATACTACCACTTCTATCTGAGGCCCTCCAAGATGTTGGTTCATCGATTGAGTACCGTTTAGCATTGCCATCACCTACTTATCTACCTAAACCGGGAGAGTTTATTCGTGAAGAGCTGTTTAAGTTAATTGAAAATACACAATCTCGGGTATTCATTGTTCTGCAATCATCCCTGGAAATGGTGATTCATTTGTTCAGAGAAGCTTCACAAATGGGACTTGTGGATAAAGAATCAGCTTGGATAATCCCAGAGAGCATAACTAATTTGCTGGACTATGTCAATAAGTCAGCTATTTCCCATATGGAAGGAGCTTTAGGAATCAAGACCTACTACTCTGAAAATAGCAGTGAGTATCAAGATTTTGAGGCTCAGTTCAGGAGAACTTTTCGTGCCAAGCATCCTGAGGAAGATAACAGCAACCCGGGATTTTATGCTCTGCAAGCATATGACAGCATTAAAATTGTTACCCAAGCAGTGGACAGAATGGCCAGCGGCAATGATAGTGGCAGAAATACTTTACTAAGAGAAATATTGTCAAGCAATTTCCTTGGTTTAAGTGGAGAAATTCAATTTGAAGCAACGCAGCTCTGGCAGAATCCTATATTGAGGATTGTAAATGTGGATGAGAAGAGTTACAGAGAATTAGACTTTTGGACTCTAGAAAGTGGGTTCATCACTAGCCTCCTCACGAAACAAGGTAGAAATAGTGTTTCTAGGAACACAGAAAGTTTAAATGGCGTAGTGATTTGGCCTGGGAAATTGTTGAGAAGTCCAAAGGGATGGAATCTGCCTACTAAACAAAATCCTATGAAAATTGCAGTCCCTGGAAGAACCCAATTTTCCAAGTTTGTCAAGGTTGATTATGACGAGCATGGAAAACCATATAAATATACTGGATTTTGCATTGAAATTTTTGAGAAGGTCTTAGGACTTTTGGGGTATGATCTACCATATGAATATTATCCTATCAGTGGATCCTATCCTGATCTAGTTCAATTTGTCTACAACAAGACTTATGAGGCAGTTGTTGGCGACATGACCATACTGGCAGAGAGAGTGCCATATGTAGATTTTACTGTGCCATATTTAGAATCAGGATTGTCAATGATAGTTCCAGAAAAGTCCCAAGAATCTGCATGGATGTTTATGAAGCCCTTCACCTGGCAAATGTGGGTGGTAACTGGTGCCATCTTGACTTACACAATGTTGGTAGTGTGGTACCTGGAGCGGGAACCCAATCCAGAGTTTCATGGCAATTGGAAAAGCCAGATCAGCACTGCTCTTTGGTTTACTTTCTCCTCTCTATTCTTTGCTCATAGGGAGAAAATGCATAGCAACTTATCTCGTGTAGTGATGGTATCATGGCTCTTTCTAGTTTTGATTCTTAACTCAAGCTACACTGCAAGTCTTTCCTCGATGCTCACAGTTCAAAAACTGCAACCAAGTGTCACAGACATGGAGTGGCTGAAGAAGAACAACATGAAAATTGGTTGTGATGGAGATTCATTTGTTAGGACATACCTAGAGAAAGTCGAAAAATACAGGCCAGAGAACATCATAAACATTAGTAGTGAAATCAATTATGTCAGTGCATTCAAAAACTACTCAATAGCTGCTGCTTTTCTCGAACTCCCTTATGAAAAAGTATACATCAGTAAATACTGCAAGGGGTACTCTGGCTCTACACCAACCACCAGATTTGGAGGACTGGGATTCATGTTCCAGAAAGGCTCCCCCGTGGTCAGAGATGTTTCTAAAGCTATTTTGCAGCTCCTAGAGGAGGGAGAAGTGCAGAGGTTGGAAGAGAAATGGTTGAATGTCTCAGGCGAGTGCTCTAACAATTTGACCTCAGAGGGTGCAGAAAGTTTGAATCTTGCAAGTTTCTGGGTCCTATATGTGATTTCTGGTGCCACTTCTACTATTTGTTTTCTACTTTCTACCATCCATTCGCTAAAATCTAAACAAACACACCGAGATGAGGCACAAGAAGGTGATGGCTACCCAAATGACGAGAACCCGTGGAAAAGGGTGGTTAAATTAACTAAGCAGATTTGTAGCAAAAAGCATAATAGAGCAGCAAAGGCACACGTAGACGTTACTGATCGTTCTTCCAGATGTGATAGTAACAGTACCACTGACACCCCTGAGCATCAACAGGCAATGGCTCTTCAATTATCAGAAATCATAACGGCTTCCTCCCCACGATCACATGTGACTACTCCTGATCACTATGGAAACATAACCAACAAAAAGCATTTTTGTACAACTCTAACTATAGGGGGGCAACTTAAGGAAGGAGGCATGTATATATAG 2883 0.4145 MHFPSTSLQALARIWLSYLFIYFVLINGYQAEAIDGDNKVISIGAIIDVNSRIGKEQRLAMDIAAQSYNKSSKTYKLALYFQEPTKDPFRATSLAEEMTKTQKVQVIVGMHTWTEAASVAELVRQTQVPIISFVAPTSTPPLMPIRWPFLVTMANNGTAYVKCVVDMVHAYGWQKVVAIYEDDAYGGDSGILPLLSEALQDVGSSIEYRLALPSPTYLPKPGEFIREELFKLIENTQSRVFIVLQSSLEMVIHLFREASQMGLVDKESAWIIPESITNLLDYVNKSAISHMEGALGIKTYYSENSSEYQDFEAQFRRTFRAKHPEEDNSNPGFYALQAYDSIKIVTQAVDRMASGNDSGRNTLLREILSSNFLGLSGEIQFEATQLWQNPILRIVNVDEKSYRELDFWTLESGFITSLLTKQGRNSVSRNTESLNGVVIWPGKLLRSPKGWNLPTKQNPMKIAVPGRTQFSKFVKVDYDEHGKPYKYTGFCIEIFEKVLGLLGYDLPYEYYPISGSYPDLVQFVYNKTYEAVVGDMTILAERVPYVDFTVPYLESGLSMIVPEKSQESAWMFMKPFTWQMWVVTGAILTYTMLVVWYLEREPNPEFHGNWKSQISTALWFTFSSLFFAHREKMHSNLSRVVMVSWLFLVLILNSSYTASLSSMLTVQKLQPSVTDMEWLKKNNMKIGCDGDSFVRTYLEKVEKYRPENIINISSEINYVSAFKNYSIAAAFLELPYEKVYISKYCKGYSGSTPTTRFGGLGFMFQKGSPVVRDVSKAILQLLEEGEVQRLEEKWLNVSGECSNNLTSEGAESLNLASFWVLYVISGATSTICFLLSTIHSLKSKQTHRDEAQEGDGYPNDENPWKRVVKLTKQICSKKHNRAAKAHVDVTDRSSRCDSNSTTDTPEHQQAMALQLSEIITASSPRSHVTTPDHYGNITNKKHFCTTLTIGGQLKEGGMYI* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02186 960 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 872 IPR015683 -
Rops2g02186 960 SUPERFAMILY Periplasmic binding protein-like I 38 451 IPR028082 -
Rops2g02186 960 CDD GluR_Plant 458 795 - -
Rops2g02186 960 Gene3D - 469 568 - -
Rops2g02186 960 Gene3D - 569 706 - -
Rops2g02186 960 FunFam Glutamate receptor 160 329 - -
Rops2g02186 960 PIRSF IGluLR_plant 9 932 IPR017103 -
Rops2g02186 960 SMART GluR_14 461 797 IPR001320 GO:0015276|GO:0016020
Rops2g02186 960 CDD PBP1_GABAb_receptor_plant 42 414 IPR044440 -
Rops2g02186 960 Gene3D - 163 329 - -
Rops2g02186 960 MobiDBLite consensus disorder prediction 885 907 - -
Rops2g02186 960 FunFam Glutamate receptor 569 707 - -
Rops2g02186 960 Pfam Bacterial extracellular solute-binding proteins, family 3 486 796 IPR001638 -
Rops2g02186 960 Pfam Ligand-gated ion channel 797 826 IPR001320 GO:0015276|GO:0016020
Rops2g02186 960 SUPERFAMILY Periplasmic binding protein-like II 437 795 - -
Rops2g02186 960 Gene3D - 36 162 - -
Rops2g02186 960 FunFam Glutamate receptor 455 569 - -
Rops2g02186 960 Pfam Receptor family ligand binding region 58 398 IPR001828 -
Rops2g02186 960 Gene3D - 707 798 - -
Rops2g02186 960 Coils Coil 960 960 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02186 Rops-Chr2 34785798 34789878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02186 17 852 Ion Channels AT2G29120 32.872 3.81e-146 457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02186 - - gmx:100780320 1338.55