Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02176 ATGGTTTTACTCTCACAAACAGAGTTACCCCTCAATGAGAACGATTCTCAAGACATGGTCCTATACCAAGTTTTGAACGAGGCAAATGCTATGAACAACACATTGGTACAACAGAGGCACCAAAATGGCCTAGAACCAAGAAAGAACATAAGCAAGAAGCACTACAGAGGCGTGAGGCGCAGACCTTGGGGGAAATATGCTGCAGAGATTCGTGACTCGACAAGACATGGAGCTAGGATTTGGCTTGGTACATTTGAAACTGCTGAAGAGGCTGCTATGGCTTATGACAAAGCTGCTTTCAAAATGAGGGGTGCCAAGGCTTTGCTGAATTTCCCACCTGAAATTGTTGCTTCTGATTCTATGAAATTGACTTCTAAGCCTGATTTGAGCTCAGGGAGCTTCAATAATCAGGATTCTGATGAGTTAAGTGCTAGCAACTCTTGGTCAACTTCCTTTGGGGCAAGTAGTGCTAGTGCCCAATCAGAAAGCACAAATAGCACTGGCTGCTAG 510 0.4451 MVLLSQTELPLNENDSQDMVLYQVLNEANAMNNTLVQQRHQNGLEPRKNISKKHYRGVRRRPWGKYAAEIRDSTRHGARIWLGTFETAEEAAMAYDKAAFKMRGAKALLNFPPEIVASDSMKLTSKPDLSSGSFNNQDSDELSASNSWSTSFGASSASAQSESTNSTGC* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02176 169 ProSiteProfiles AP2/ERF domain profile. 54 112 IPR001471 GO:0003700|GO:0006355
Rops2g02176 169 SMART rav1_2 54 118 IPR001471 GO:0003700|GO:0006355
Rops2g02176 169 SUPERFAMILY DNA-binding domain 54 114 IPR016177 GO:0003677
Rops2g02176 169 MobiDBLite consensus disorder prediction 126 169 - -
Rops2g02176 169 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Rops2g02176 169 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Rops2g02176 169 FunFam Ethylene-responsive transcription factor 2 53 114 - -
Rops2g02176 169 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Rops2g02176 169 CDD AP2 53 112 IPR001471 GO:0003700|GO:0006355
Rops2g02176 169 Gene3D AP2/ERF domain 53 113 IPR036955 GO:0003700|GO:0006355
Rops2g02176 169 PANTHER DNA-BINDING DOMAIN 41 153 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02176 Rops-Chr2 34605786 34606716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02176 9 116 AP2-EREBP Transcription Factor Family AT3G23240 57.143 2.54e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g02176 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02176 K13433 - zju:107411165 194.897