Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02175 ATGGAGAAACAGGACAAAGAAGGGAGAAGATACAATGCCAATGGCTCTGCATGCGCTGCTTGCAGGCACCAAAGGAAAAAGTGCAGTGAAAACTGTGTTCTTGCTCCTTATTTCCCAGTGGGCAAGATCAGAGAGTATGAAGCCATTCACAAGGTTTTTGGGTACAGCAACATATCAAAGATGCTCACAAACCTTGATGAACAAGCAAGAAGAGAAGCCATCAAGTCTTTTGAATGGGAAGCCATGATGTGGAAGGAAGATCCTGTCTTTGGACCCCTTGGTGCCTTCAACAAGGTACGTTACATGTTCACACAACTATGGCACCATCTCTGCCAACAACAACAACTACAAATGGTTCCAATTTTTGAGCCCAAGTTGATGGCCATGGCCCAAGACTTTTCATTACCCTTTAACAATGGCACCAATAATGAGGCTCTTGCAGTTTCCAACAATGTCAATTGGGCTCCTCCTTTGGTGGCTAACAATGTTGGGCAAACTCCTACCAAGTCTTCTTGCCAAGAAAAAAGTTCAGTGTCATGTCCATGTGTAACATGTGTTCCTTCCCATAATGCTTTGCATCCTACACTATTGCAGCCCAATTATATGCCAAGCCTGACAAGTGTTGCTAGACCTGATGATACAGTGTTATCTTTAGTAATGGATCAACCCAGCCAAGTTAGAGATTTTCAATATTATAATGAGAATAAGATGAATGGGCAAATAGGAATGCAAAGAGGTCAAGGAACAGAAGGCAATGCTGCTGAGAATATTTACTCAGAAGGGCATGGACAACAGGACCATGAAGAGGTAATCCCTGTTGAGAATAGTGTTATTGAAGGTAATAATACTAATCATACAATGGCACAAAACAGAGTAAGGAGCCGAATTACAGAATTTCAGCATTCTTCTTATGATCCTCTTGGACATACAAGAGTTAACCAAGATGACCAACATTGTGTTAAACGGCACAAGATTTCATTTGTTGATTTTATTCCCTTTAATTTTGTTTATGTAGACCAGTTAAATAGTGGAGTGAAGCAGCCGATGGAGGATGCAACAATAACAACTAAGCCTTATTCCATTAGGTGGGGTCAACAAGATGGAGGATACGACACTGAAGAAAAATATTTTTAA 1134 0.4083 MEKQDKEGRRYNANGSACAACRHQRKKCSENCVLAPYFPVGKIREYEAIHKVFGYSNISKMLTNLDEQARREAIKSFEWEAMMWKEDPVFGPLGAFNKVRYMFTQLWHHLCQQQQLQMVPIFEPKLMAMAQDFSLPFNNGTNNEALAVSNNVNWAPPLVANNVGQTPTKSSCQEKSSVSCPCVTCVPSHNALHPTLLQPNYMPSLTSVARPDDTVLSLVMDQPSQVRDFQYYNENKMNGQIGMQRGQGTEGNAAENIYSEGHGQQDHEEVIPVENSVIEGNNTNHTMAQNRVRSRITEFQHSSYDPLGHTRVNQDDQHCVKRHKISFVDFIPFNFVYVDQLNSGVKQPMEDATITTKPYSIRWGQQDGGYDTEEKYF* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02175 377 Pfam Lateral organ boundaries (LOB) domain 17 112 IPR004883 -
Rops2g02175 377 ProSiteProfiles LOB domain profile. 16 117 IPR004883 -
Rops2g02175 377 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02175 Rops-Chr2 34594758 34597746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02175 17 99 AS2 family AT1G06280 46.988 3.15e-25 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops2g02175 LOB 5.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02175 - - lang:109327917 251.521