LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g02155	ATGGCTGGTTTGATTGATCTTAACACCACTGAGGATGATGAAACGCCGTCGTCTGGTTCATCCTCTGGCACCACCTTAAGTACTACTCATGCTTCTGCTTCTTCTGTGTGTTTGGAGCTTTGGCATGCGTGTGCGGGTCCAATGATCTCATTGCCAAAGAAAGGAAGTGTGTTTGTGTACTTCCCTCAGGGACATTTGGAACACCTTCAGGATTTTCCGCTATCTTTATGTGATAACATACCACCCCATGTGTTCTGTCGTGTTGTTGATGTTAAACTTCATGCTGAGGAAGGGAGTGATGAAGTGTATTGCCAGGTGTTGTTGGTTCCTGAAAGTGAGCAAGTGCAGCAGAAGTTTCAGGCAGGGGAAGTTGATGCTGATGGCGAAGAGGAGGATACTGAAGCTGTGATGAAGTCAACAACACCCCACATGTTCTGCAAGACACTCACTGCTTCTGATACTAGCACTCATGGTGGATTCTCCGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCTCCCCTGGATTACAGTCAACAGAGACCTTCACAAGAGCTTGTGGCAAAGGATCTGCATGGTCAGGAATGGAGGTTTCGACATATTTACCGGGGGCAGCCACGAAGACATTTGCTTACAACTGGATGGAGTGCATTTGTGAACAAGAAGAAGCTAGTATCTGGAGATGCTGTTCTGTTTCTTAGGGGTGAGGATGGAGAGTTGAGATTGGGAATTCGAAGGGCAGCTCAATTGAAAAATGCCAGTACCTTTTCAGCTCTCTCTGGCCAGCAATTGAATCTTAGCAGTCTTACGGATGTGGCAAATGCTTTATCTACAAGATGTGCATTTAGCATTCACTATAATCCGAGGGTCAGCTCATCTGAATTCATCATACCTATCCACAAATTCTTAAAGAGCCTTGATTATTCTTATTCAGTTGGAATGAGGTTTAGGATGCGTTTTGAAACCGAAGATGCTGCAGAGCGAAGATTCACAGGATTAATTGTTGGAATTACTGATGTGGATCCTGTTAGATGGCCCAGATCAAAATGGAAGTGCCTAGTGGTAAGGTGGGATGACTTAGAAGCCACAAGGCATAATAGGGTTTCCCCATGGGAGATTGAACCATCTGGTTCTGCTTCCACCACCAGTAACTTGATGGCAGCTAGTTTGAAGAGGACCAAGATTGGATTGCCTTCAGCCAAGCTAGAATTTGCAGTTCCCAATGGGATTGGGAGATCAGACTTTGGGGAATCACTAAGGTTCCAGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTGATACTACTTTTGATAGTATTAGTGCTCAGAGTCACCAGTTATCTGAATTTAGGAGGTGCTATCCAGGTTCAAACTATCCTGGGATCGCCTCTACAGGAAATAGCATCAGAATCCCACAAATGAATTCTGGTGCTCCCTGCAATGGCATAGGCTTTAGTGAATCTTTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATACTTCCCAGCCAACCATATGGAAGAGCATTGTCTGTTGATGAGGCTTGTGGAAATGGTCGCTTTGGACCTTTTGATGGTTACCAGTTGCCGAGATCTAGAAATGGATGGTCTGCCCATGTGAATAACAATTCTTCACATCTGCATCAATCTATTCCAGCTGGGCAAGTTTCATCTCCATCATCTGTGTTCTTGTTTCAGCAAGCAGTCAATCCACTTTCGGACTCAGATTACAATAACAAAATCAATCAGGTGATGGAGGGTAAAGTCCATCAACGAGGTTCATATGCTTCTGAAGTGAAAGGTGGAACATTTGTGCCAACCCCCTCTTATGAGCCTACTTTCCATGGGCTGGCCCAGGAAGGCGCAAATTCTTTTGGTATTTCAAATTTACATAATCAGTTGGATAGTTCACGTTCACATGATTCAATTTCAGTGCTGAGAGGCAGTCAAGAGTTGGTTTCCTCATGTAAAAGTAGCTGCAGAGTCTTTGGTTTTTCATTAACTGAGGGTGCTCCTATTGCAAATAAAGAGGCTGACCCATCTACAGTCACTTCTCAATTGAATTCTGGACCTTCCTTTACAAGACATGATGATGATTTCCGTCCAAGGCATTCACTTAGGAGCAAGGCAGTTGGAAGTTATTGTACCAAAGGTGTGCTGCAGTATTGA	2166	0.4441	MAGLIDLNTTEDDETPSSGSSSGTTLSTTHASASSVCLELWHACAGPMISLPKKGSVFVYFPQGHLEHLQDFPLSLCDNIPPHVFCRVVDVKLHAEEGSDEVYCQVLLVPESEQVQQKFQAGEVDADGEEEDTEAVMKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGQEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKNASTFSALSGQQLNLSSLTDVANALSTRCAFSIHYNPRVSSSEFIIPIHKFLKSLDYSYSVGMRFRMRFETEDAAERRFTGLIVGITDVDPVRWPRSKWKCLVVRWDDLEATRHNRVSPWEIEPSGSASTTSNLMAASLKRTKIGLPSAKLEFAVPNGIGRSDFGESLRFQKVLQGQEILGVDTTFDSISAQSHQLSEFRRCYPGSNYPGIASTGNSIRIPQMNSGAPCNGIGFSESFRFQKVLQGQEILPSQPYGRALSVDEACGNGRFGPFDGYQLPRSRNGWSAHVNNNSSHLHQSIPAGQVSSPSSVFLFQQAVNPLSDSDYNNKINQVMEGKVHQRGSYASEVKGGTFVPTPSYEPTFHGLAQEGANSFGISNLHNQLDSSRSHDSISVLRGSQELVSSCKSSCRVFGFSLTEGAPIANKEADPSTVTSQLNSGPSFTRHDDDFRPRHSLRSKAVGSYCTKGVLQY*	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g02155	721	CDD	B3_DNA	143	245	IPR003340	GO:0003677
	Rops2g02155	721	MobiDBLite	consensus disorder prediction	675	700	-	-
	Rops2g02155	721	FunFam	Auxin response factor	143	247	-	-
	Rops2g02155	721	ProSiteProfiles	B3 DNA-binding domain profile.	145	247	IPR003340	GO:0003677
	Rops2g02155	721	Pfam	B3 DNA binding domain	145	246	IPR003340	GO:0003677
	Rops2g02155	721	Gene3D	-	308	382	-	-
	Rops2g02155	721	MobiDBLite	consensus disorder prediction	10	26	-	-
	Rops2g02155	721	FunFam	Auxin response factor	308	379	-	-
	Rops2g02155	721	MobiDBLite	consensus disorder prediction	1	26	-	-
	Rops2g02155	721	SUPERFAMILY	DNA-binding pseudobarrel domain	137	263	IPR015300	-
	Rops2g02155	721	PANTHER	AUXIN RESPONSE FACTOR 4-RELATED	35	671	IPR044835	GO:0003677\|GO:0006355\|GO:0009725
	Rops2g02155	721	SMART	B3_2	145	247	IPR003340	GO:0003677
	Rops2g02155	721	MobiDBLite	consensus disorder prediction	677	692	-	-
	Rops2g02155	721	Pfam	Auxin response factor	271	352	IPR010525	GO:0003677\|GO:0005634\|GO:0006355\|GO:0009725
	Rops2g02155	721	Gene3D	-	143	247	IPR015300	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g02155	Rops-Chr2	34251625	34258306	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g02155	31	499	B3 DNA Binding Superfamily	AT5G60450	51.446	7.14e-146	442

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3-ARF	Rops2g02155		B3	9e-23	CL0405