Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02141 ATGGAGGGTGAAGCTGGTTCGGAGGGAAACGATAATCAGAAAAGGGGTGGCTCAGATGATAATAGCAATGAGAATAACAACAACGATGGAAGCAATAGCAAGAAAGCGAATTCCAATGAGGGGCAAAGCAAGCCCAAGCGCCAGATGAAGACACCCTTGCAGCTTGAAACCCTCGAGAAGGCTTATGCATTGGATAATTACCCATCTGAGGCTGTGAGGGCGGAGTTGTCAGAGAAATTGGGGTTGTCAGATCGGCAGCTGCAGATGTGGTTCTGCCATAGGAGGTTAAAGGACAAGAAGGACTTGTCGTCTAAGAAGCCGCAACGGAAGGTGGCGGCGGAGCCTTTGCCGGATTCCCCCGTGGATGACCTCAGGTTGGGCACTGAACTTGGTAATGAGTATGGATCCGGGTCTGGTTCCGGTTCGAGTCCATTTGCCCGGAATTCGGTGCCCCGGGGTGTGCCCGGTCATTATGAGTCTCCACAGGTTGTAATGGAGCTTAAAGCAATTGCTTGTGTGGAGGAACAGTTAAGGGGGCCATTGAGGGAAGATGGACCCATTCTAGGAGTAGAATTTGATCCATTGCCACCTGGTGCATTTGGGGCACCTATAGTTACAGAACACCAGAAGCGACCTCGTCTTGCCTATGACAGTAAAATGTATGAAAGACATGATGTTAGAACAAATAAGGCTATGGCAAGGACATTCCACGAATATCAATTTCTACCGAACCAGTCTGGCATTAGGTCTGATGCTTTTGGACAGTTTAGCCAATCTAATTTACATGATCCGATGGAGGGTCCTGCCAGAAATCCCTCTTTTGCCCTTGGACATGAACAGCTACCTAGAAATCATGCTACCCAAGGTCAATCTTCTCGTGCTCGTCTTTTGTCTCAACAAGACACACAAGGGAGTCCCTATCACTGTCCTGCTCGTGATGATGATGATGATGCCCCCCAAAGGGAATTGTACACGAACATAGCTAATGTTGGAACGAACTCTCACTTCACTGATTCCCAAATTGTTGGGCATGAAAATCCCCATGCATTACCTACCGGACAAATTTTGCATGGCAATGCAACCCGTATCGAGAGGAAACGAAAGAGTGATGATGCTGGAATTACAAGGGAAGTTGAAGCCCATGAGATGAGGATCCGGAAGGAGCTTGAGAAACAAGATAACCTTAGACGAAAGAATGAAGAGCGAATAAGGAAAGAAATGGAGAGACAAGATCGTGAAAGAAGGAAGGAAGAAGAAAGGTTGATGCGTGAGAGACAGCGAGAAGAGGAAAGAATGAAACGCGAGCAAAAGCGTGAAATTGAACGAAGGGAAAAGTTTTTGCTGAAAGAAAACTTAAAAGCTGAGAAATTAAGGCAAAAAGAAGAGCTTCGCAAAGAGAAAGAGGAAGAGAGAAGGAGAGCTGCCCTTGAGAAGGCAACTGCCCGTAGAATGGCTAAGGAATCTATGGAACTTATCGAGGATGAACAGCTTGAAATGATGGAGTTGGCTGCCTCAAGCAAGGGGTTTTCCTCTATTATCCATCTTGATTTTGATACTTTACAAAACCTTGAATCATTTAGGGATTCATTGAGTGTTTTCCCACCTGAGAGTGTAAAGCTAAGAAAACCATTTGCCATCCAACCCTGGATCAACTCAGATGAGAATGTTGGCAACCTTCTCATGGTTTGGAGATTTTTGATTACCTTTGCTGATGTTCTAGAGTTATGGCCTTTTACTCTTGATGAGTTTGTGCAAGCATTTCACGACTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAGGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTGTACAGGATTAGGAATGAATCAGAATGGTGCTGCTAATTCTGGAGGTGGCCATCCAGAGATTGTGGAGGGGGCATATGCATGGGGCTTTGACATACGAAATTGGCATAAACACTTAAACCAGTTGACATGGCCAGAAATTTTCCGTCAGCTAGCATTATCTGCAGGATATGGACCACAGTTGAAGAAAAGAAGTATTACATGGTCATGTGCAAATGATAAAGATGAGGGAAGAAGTTCTGAAGATGTCATTTCTACACTTCGTAATGGCTCAGCAGCCGAAAATGCTGTGGCAAAAATGCAGGAGAAAGGTCTATTAGCACCTCGAAGATCTAGGCATCGGTTAACTCCTGGAACAGTTAAGTTCGCAGCATTTCATGTTCTCTCACTTGAGGGTAGCAAGGGATTGACAGTACTAGAGCTCGCAGATAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACCAGCAAGACTCCTGAGGCATCAATTTCTGTTGCTTTAACAAGAGATGTCAAGCTTTTTGAAAGAATAGCTCCATCAACATATCGTGTACGTGCTGCATTTAGGAAGGACCCAGCTGATGCTGAGTCCATTCTATCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCCGGGGAAGATGCTGATGATGTTGAAAGAGAAGAGTCAGAAAGTGATGAAGTTGATGAGGATCCTGAAGTTGATGATTTGATAAATCCTTCAAGTGCTAACAAAACATCTGAACAGTGTGATGATTTCTCTTCTAATGGAAAAGAAAATTTGGGTCATGATGTAGAACTTAAAGATGAGTTTGATAAGGATCTGCCTTGTTTTCCTAAGAACGGTTCCAAGAATGCTGATTGTCCAAATGCTGTTACTGGACAACCTGTTGCTTGTGAAGATCTGAATGCTGGAAATCTTGGTGAAGATAATATGGAAATCGATGAAAGCAAATCTGGAGAGTCATGGGTTCAAGGGCTTACAGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTTTAAGTGCTCTTGTTGTATTGGTTGGTGTGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGTTTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTCTGAAAGAGGATAATTTTAATAAATCAGATTTTCCATCTATCAATGGGAATAAAGTTGAAACACAATGCGCATGCCCTGCGGTGGAGGGCAACCAAAGCCCATTGCTTGACATTAATATTGGTGATAATAATAATGAGGCATCTCCCAGCACTACAGAAAATCAAAAGTTAGCTCCTGTTGTGCAAAGCCTGTCTATTGAAAAGCCGTCTTCTGTTCAAGATCTCTGCACAGAGGAGATGTATGTCTACAGATCCTTACCCCTTGGGCAAGATCGCAGACGTAATCGATATTGGCAATTTGTTGCATCTGCTTCTTGCAATGATCCTGGTTCTGGCAGGATCTTTGTTGAATATCATGATGGCAATTGGAGGCTTATTGATTCTGAAGAGGCCTTTGATGCACTTTTGAATTCGCTGGATTCACGTGGGATCAGGGAATCTCATTTGCGCCTAATGTTGCAAAAGATTGAGAATACCTTAAAAGAAAATGTTCGAAAGAATACACAATGTGCCAAAATTGGAAGCAGAGGTGAAACTTGTGTTAAAAATGAAGCCGATGAAACAGATTCCAGTCCTGATTGCCATACTAGATCTGACAGTCCTAGCAGTACTCTGTGTGGCTTGAACTCTGATACTTCAGAAACTTCATCCTCCTTCAAGATTGAGCTCGGGAAAAGTGAGAGCGACAAGAAAGCTGCCTTGACAAGGTATCAAGATTTTCAAAAATGGATGTGGAAAGAATGCTATAACTCATCAATATTACATGCTATGAAATATGGGAAAAAGAGATGTAAACCTCTGGTTGGCATCTGTGACATCTGTCTCAACCCTTATTTCTTTGAAGACTCCCATTGCAATTGCTGCCACCGTACTTTTCCCTCAAATAATGGATTTAATTTTTCCAAACATGCATTTCAATGTGGAGACAAATTATCCAAAGATGTTAGAATTTTGGATTCTTCTCTTCCCTTACGGACAAGTTTGCTTAAGGCCCTGCTGGCTTTTATTGAGGTATCTGTTCCACCTGAAGCATTTCGATCAATATGGACAGAAGATATTAGGAGGCGCTGGGGGGTGAAGTTGAGCAAATCATCTTCTGTTGAGGAACTTCTACAGATATTGACCCTATTTGAGAGAGCATTAAAGCGAGATTTTTTATCATCAACCTTCTCCATGACAGGGGAATTGTTAGGGTTGGGCACCATGTCAGAGAGTGCTGCACATACTTCTATGGACACTGAATCAGTAGCTGTACTTCCATGGGTTCCACGGACCACTCCAGCAGTGTCTCTCAGACTTTTTGAGTTTGATGCATCCATTATCTACGTACAACTCGAGAAACCTGAGCCTGCTAGGGATTATGCAAAGCTTCCTTCAAGATATGGTCTTGTCAAATCTAAGAAAGTGGTTGAACCAGCAGACTTGGACCATGATGAATTCATCAAAGCTGAATCTGCTCCTATAAAAATTATGCGAAGCAGCAATAAACGGGGTCGAGCACGTCATGATAAAGGACTGGGTAAAAGGCCATCTAAAAGAATGCGTGATTCCAAAAAAGATGTCGGCCGCCGTAGTAATGTTAAGGTCACTGAAAATCTTAGTCAGAGAATAAAGCAGAAGGGACAAGGATCACAAGGACAAGCTGGTGGACGTGGCCGGCGAACAATCAGGAAAAGGAGAGTGGAGAAGAGGGCTGTTGAAGATTTGCTGCTGGGTCATAGGGCTGCCACTCATAGCTCCAGTATCAGTAGAGAACCATTGAGAATGTTGGATGAGGACTGGGATGATGAAAAGTCAAGTCCCATGACTCCCATCCACATGGGGGCTGCTGACCTTAATAACAGTGCTGAAGAGGCTGAATCTGATGACAATGGCCAAGCAGTGGAGTATGATCAAGGAAACTGGGAGATAGGTTTTAATGGGACCTCGAACAGATGGCGTAGGGATATGGTTGAAACGAGTGACGAAGATGTGGAAGCTTCTGAAGATGACAATGACAATGACAATGGCATTGAACAGAATGAAGAGGAGGATTCAGAGGCAGATGTTATGAGCGAGGAGGGTTCAGATGGTATGGCAAATAGAGTTGTAAATGAAGAAAGCTCAGACTCAGCTGTCTCTGAAGATTCTTCTGTTTAG 5157 0.4328 MEGEAGSEGNDNQKRGGSDDNSNENNNNDGSNSKKANSNEGQSKPKRQMKTPLQLETLEKAYALDNYPSEAVRAELSEKLGLSDRQLQMWFCHRRLKDKKDLSSKKPQRKVAAEPLPDSPVDDLRLGTELGNEYGSGSGSGSSPFARNSVPRGVPGHYESPQVVMELKAIACVEEQLRGPLREDGPILGVEFDPLPPGAFGAPIVTEHQKRPRLAYDSKMYERHDVRTNKAMARTFHEYQFLPNQSGIRSDAFGQFSQSNLHDPMEGPARNPSFALGHEQLPRNHATQGQSSRARLLSQQDTQGSPYHCPARDDDDDAPQRELYTNIANVGTNSHFTDSQIVGHENPHALPTGQILHGNATRIERKRKSDDAGITREVEAHEMRIRKELEKQDNLRRKNEERIRKEMERQDRERRKEEERLMRERQREEERMKREQKREIERREKFLLKENLKAEKLRQKEELRKEKEEERRRAALEKATARRMAKESMELIEDEQLEMMELAASSKGFSSIIHLDFDTLQNLESFRDSLSVFPPESVKLRKPFAIQPWINSDENVGNLLMVWRFLITFADVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPCTGLGMNQNGAANSGGGHPEIVEGAYAWGFDIRNWHKHLNQLTWPEIFRQLALSAGYGPQLKKRSITWSCANDKDEGRSSEDVISTLRNGSAAENAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASISVALTRDVKLFERIAPSTYRVRAAFRKDPADAESILSEARKKIQIFENGFLAGEDADDVEREESESDEVDEDPEVDDLINPSSANKTSEQCDDFSSNGKENLGHDVELKDEFDKDLPCFPKNGSKNADCPNAVTGQPVACEDLNAGNLGEDNMEIDESKSGESWVQGLTEGEYSDLSVEERLSALVVLVGVANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKVRLKEDNFNKSDFPSINGNKVETQCACPAVEGNQSPLLDINIGDNNNEASPSTTENQKLAPVVQSLSIEKPSSVQDLCTEEMYVYRSLPLGQDRRRNRYWQFVASASCNDPGSGRIFVEYHDGNWRLIDSEEAFDALLNSLDSRGIRESHLRLMLQKIENTLKENVRKNTQCAKIGSRGETCVKNEADETDSSPDCHTRSDSPSSTLCGLNSDTSETSSSFKIELGKSESDKKAALTRYQDFQKWMWKECYNSSILHAMKYGKKRCKPLVGICDICLNPYFFEDSHCNCCHRTFPSNNGFNFSKHAFQCGDKLSKDVRILDSSLPLRTSLLKALLAFIEVSVPPEAFRSIWTEDIRRRWGVKLSKSSSVEELLQILTLFERALKRDFLSSTFSMTGELLGLGTMSESAAHTSMDTESVAVLPWVPRTTPAVSLRLFEFDASIIYVQLEKPEPARDYAKLPSRYGLVKSKKVVEPADLDHDEFIKAESAPIKIMRSSNKRGRARHDKGLGKRPSKRMRDSKKDVGRRSNVKVTENLSQRIKQKGQGSQGQAGGRGRRTIRKRRVEKRAVEDLLLGHRAATHSSSISREPLRMLDEDWDDEKSSPMTPIHMGAADLNNSAEEAESDDNGQAVEYDQGNWEIGFNGTSNRWRRDMVETSDEDVEASEDDNDNDNGIEQNEEEDSEADVMSEEGSDGMANRVVNEESSDSAVSEDSSV* 1719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02141 1718 ProSiteProfiles 'Homeobox' domain profile. 41 101 IPR001356 GO:0003677
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1189 1221 - -
Rops2g02141 1718 Coils Coil 400 443 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1201 1221 - -
Rops2g02141 1718 SMART HOX_1 43 105 IPR001356 GO:0003677
Rops2g02141 1718 MobiDBLite consensus disorder prediction 834 882 - -
Rops2g02141 1718 ProSiteProfiles HARE-type HTH domain profile. 735 804 IPR007759 GO:0006355
Rops2g02141 1718 Coils Coil 378 398 - -
Rops2g02141 1718 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 940 983 IPR028942 -
Rops2g02141 1718 Gene3D - 27 103 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 283 306 - -
Rops2g02141 1718 SMART testlast3 553 612 IPR018501 -
Rops2g02141 1718 CDD homeodomain 46 95 IPR001356 GO:0003677
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1661 1691 - -
Rops2g02141 1718 ProSiteProfiles DDT domain profile. 553 612 IPR018501 -
Rops2g02141 1718 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 28 1717 IPR044977 GO:0006357
Rops2g02141 1718 Pfam DDT domain 554 609 IPR018501 -
Rops2g02141 1718 SUPERFAMILY Homeodomain-like 32 100 IPR009057 -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 133 147 - -
Rops2g02141 1718 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1090 1162 IPR028941 -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1515 1532 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1496 1567 - -
Rops2g02141 1718 Pfam Homeodomain 44 100 IPR001356 GO:0003677
Rops2g02141 1718 Coils Coil 449 484 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1701 1718 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 19 50 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 406 437 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 836 857 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 860 877 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1 55 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 255 318 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 99 154 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1620 1718 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1533 1555 - -
Rops2g02141 1718 MobiDBLite consensus disorder prediction 1500 1514 - -
Rops2g02141 1718 Pfam HB1, ASXL, restriction endonuclease HTH domain 735 803 IPR007759 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02141 Rops-Chr2 34039488 34050307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02141 4 1650 Homeobox Transcription Factor Family AT1G28420 48.702 0.0 1310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops2g02141 WSD 2.2e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02141 - - gmx:100818817 2481.44