LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g02122	ATGATGGAGGAAGGGTTTTTGCTCCATTGCTCCAAATCGGATGAAAGAGAGCTTAAAAGACAAAGGAGGAAGCAGTCTAACAGGGGTTCTGCTCACAGATCCAGGTTGCGCAAACAGGCTGAGTGTGATGGGTTAGCTCAGCGTGCAGAAGCTTTGAAAGAAGAATATAGGACAAGTTTGCATGGCTGTGAGATGAGGAATTCTCACAACTAG	213	0.4601	MMEEGFLLHCSKSDERELKRQRRKQSNRGSAHRSRLRKQAECDGLAQRAEALKEEYRTSLHGCEMRNSHN*	71

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g02122	70	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	22	37	IPR004827	GO:0003700\|GO:0006355
	Rops2g02122	70	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	17	55	IPR004827	GO:0003700\|GO:0006355
	Rops2g02122	70	SUPERFAMILY	Leucine zipper domain	18	65	IPR046347	GO:0003700\|GO:0006355
	Rops2g02122	70	MobiDBLite	consensus disorder prediction	1	42	-	-
	Rops2g02122	70	CDD	bZIP_plant_GBF1	20	55	IPR045314	GO:0003700\|GO:0006355
	Rops2g02122	70	Gene3D	-	18	68	-	-
	Rops2g02122	70	Coils	Coil	35	55	-	-
	Rops2g02122	70	SMART	brlzneu	15	69	IPR004827	GO:0003700\|GO:0006355
	Rops2g02122	70	Pfam	bZIP transcription factor	15	55	IPR004827	GO:0003700\|GO:0006355
	Rops2g02122	70	PANTHER	G-BOX-BINDING FACTOR 3-RELATED	11	56	IPR044827	GO:0003700\|GO:0006355\|GO:0043565
	Rops2g02122	70	MobiDBLite	consensus disorder prediction	8	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g02122	Rops-Chr2	33762666	33764407	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g02122	14	55	bZIP Transcription Factor Family	AT2G35530	85.714	1.36e-17	72.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Rops2g02122		bZIP_1	7.1e-14	CL0018