Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02122 ATGATGGAGGAAGGGTTTTTGCTCCATTGCTCCAAATCGGATGAAAGAGAGCTTAAAAGACAAAGGAGGAAGCAGTCTAACAGGGGTTCTGCTCACAGATCCAGGTTGCGCAAACAGGCTGAGTGTGATGGGTTAGCTCAGCGTGCAGAAGCTTTGAAAGAAGAATATAGGACAAGTTTGCATGGCTGTGAGATGAGGAATTCTCACAACTAG 213 0.4601 MMEEGFLLHCSKSDERELKRQRRKQSNRGSAHRSRLRKQAECDGLAQRAEALKEEYRTSLHGCEMRNSHN* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02122 70 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 22 37 IPR004827 GO:0003700|GO:0006355
Rops2g02122 70 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 17 55 IPR004827 GO:0003700|GO:0006355
Rops2g02122 70 SUPERFAMILY Leucine zipper domain 18 65 IPR046347 GO:0003700|GO:0006355
Rops2g02122 70 MobiDBLite consensus disorder prediction 1 42 - -
Rops2g02122 70 CDD bZIP_plant_GBF1 20 55 IPR045314 GO:0003700|GO:0006355
Rops2g02122 70 Gene3D - 18 68 - -
Rops2g02122 70 Coils Coil 35 55 - -
Rops2g02122 70 SMART brlzneu 15 69 IPR004827 GO:0003700|GO:0006355
Rops2g02122 70 Pfam bZIP transcription factor 15 55 IPR004827 GO:0003700|GO:0006355
Rops2g02122 70 PANTHER G-BOX-BINDING FACTOR 3-RELATED 11 56 IPR044827 GO:0003700|GO:0006355|GO:0043565
Rops2g02122 70 MobiDBLite consensus disorder prediction 8 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02122 Rops-Chr2 33762666 33764407 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02122 14 55 bZIP Transcription Factor Family AT2G35530 85.714 1.36e-17 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops2g02122 bZIP_1 7.1e-14 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02122 K09060 - qsu:112023926 77.0257