Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02117 ATGCTTTCTGTTAAAGAAAAAAAAAAGGCAAAAGTCTCAACACACGGATTCAAGATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTGAAGGCCAAGATTCAAGACAAGGAAGGGATCCCACCAGATCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGGCGCACCCTTGCTGATTACAACATCCAAAAGGAGTCTACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGGATGCAGATCTTTGTCAAGACCCTCACTGGAAAGACCGTCACCCTTGAGGTGGAGAGCTCTGATACAATAGACAATGTAAAGGCTAAGATTCAGGACAAAGAAGGCATTCCACCAGACCAACAGAGACTCATCTTTGCAGGCAAACAGCTTGAGGATGGACGGACATTAGCTGATTACAACATTCAGAAAGAGTCCACTCTTCATTTGGTGCTCCGTCTCCGTGGTGGCATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATTACCCTTGAGGTGGAGAGTTCTGACACCATAGACAATGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAACAGAGGCTTATCTTTGCTGGAAAACAGCTTGAAGATGGACGAACCTTGGCTGATTACAACATCCAAAAAGAGTCAACCCTCCACCTTGTCTTGAGGCTCCGTGGTGGGATGCAGATTTTCGTGAAGACCCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCGGATACAATTGACAATGTAAAGGCTAAGATCCAGGACAAGGAAGGTATCCCCCCAGACCAGCAAAGGTTGATATTTGCTGGAAAGCAGCTCGAAGATGGACGTACACTGGCAGACTATAACATTCAGAAAGAATCTACCCTTCACCTTGTCCTTCGCCTGAGGGGAGGCATGCAGATATTTGTGAAGACTTTGACTGGAAAGACTGTTACCTTGGAGGTTGAAAGTTCAGACACAATAGATAATGTCAAGGCCAAAATCCAGGACAAGGAGGGAATCCCACCAGACCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGCCTACGTGGTGGATTTTAA 1200 0.4658 MLSVKEKKKAKVSTHGFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTVTLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTVTLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02117 399 SUPERFAMILY Ubiquitin-like 18 94 IPR029071 -
Rops2g02117 399 Pfam Ubiquitin family 173 244 IPR000626 GO:0005515
Rops2g02117 399 Pfam Ubiquitin family 21 92 IPR000626 GO:0005515
Rops2g02117 399 Pfam Ubiquitin family 325 396 IPR000626 GO:0005515
Rops2g02117 399 Pfam Ubiquitin family 249 320 IPR000626 GO:0005515
Rops2g02117 399 Pfam Ubiquitin family 97 168 IPR000626 GO:0005515
Rops2g02117 399 CDD Ubl_ubiquitin 95 170 - -
Rops2g02117 399 SMART ubq_7 323 394 IPR000626 GO:0005515
Rops2g02117 399 SMART ubq_7 171 242 IPR000626 GO:0005515
Rops2g02117 399 SMART ubq_7 247 318 IPR000626 GO:0005515
Rops2g02117 399 SMART ubq_7 95 166 IPR000626 GO:0005515
Rops2g02117 399 SMART ubq_7 19 90 IPR000626 GO:0005515
Rops2g02117 399 CDD Ubl_ubiquitin 247 322 - -
Rops2g02117 399 SUPERFAMILY Ubiquitin-like 322 398 IPR029071 -
Rops2g02117 399 ProSitePatterns Ubiquitin domain signature. 197 222 IPR019954 -
Rops2g02117 399 Gene3D - 95 170 - -
Rops2g02117 399 Gene3D - 171 247 - -
Rops2g02117 399 Gene3D - 323 399 - -
Rops2g02117 399 Gene3D - 248 322 - -
Rops2g02117 399 Gene3D - 11 94 - -
Rops2g02117 399 SUPERFAMILY Ubiquitin-like 94 170 IPR029071 -
Rops2g02117 399 SUPERFAMILY Ubiquitin-like 246 322 IPR029071 -
Rops2g02117 399 ProSitePatterns Ubiquitin domain signature. 45 70 IPR019954 -
Rops2g02117 399 FunFam Polyubiquitin 3 323 398 - -
Rops2g02117 399 ProSiteProfiles Ubiquitin domain profile. 95 170 IPR000626 GO:0005515
Rops2g02117 399 CDD Ubl_ubiquitin 19 94 - -
Rops2g02117 399 ProSitePatterns Ubiquitin domain signature. 273 298 IPR019954 -
Rops2g02117 399 PANTHER UBIQUITIN 171 248 - -
Rops2g02117 399 FunFam Polyubiquitin 3 19 94 - -
Rops2g02117 399 FunFam Polyubiquitin 3 247 322 - -
Rops2g02117 399 ProSiteProfiles Ubiquitin domain profile. 247 322 IPR000626 GO:0005515
Rops2g02117 399 ProSiteProfiles Ubiquitin domain profile. 323 398 IPR000626 GO:0005515
Rops2g02117 399 CDD Ubl_ubiquitin 171 246 - -
Rops2g02117 399 ProSiteProfiles Ubiquitin domain profile. 171 246 IPR000626 GO:0005515
Rops2g02117 399 ProSitePatterns Ubiquitin domain signature. 121 146 IPR019954 -
Rops2g02117 399 SUPERFAMILY Ubiquitin-like 170 246 IPR029071 -
Rops2g02117 399 CDD Ubl_ubiquitin 323 398 - -
Rops2g02117 399 ProSiteProfiles Ubiquitin domain profile. 19 94 IPR000626 GO:0005515
Rops2g02117 399 ProSitePatterns Ubiquitin domain signature. 349 374 IPR019954 -
Rops2g02117 399 PRINTS Ubiquitin signature 50 70 IPR019956 -
Rops2g02117 399 PRINTS Ubiquitin signature 71 92 IPR019956 -
Rops2g02117 399 PRINTS Ubiquitin signature 29 49 IPR019956 -
Rops2g02117 399 FunFam Polyubiquitin 3 95 170 - -
Rops2g02117 399 FunFam Polyubiquitin 3 171 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02117 Rops-Chr2 33707982 33711333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02117 19 95 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.11e-47 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02117 - K08770 egr:104451464 738.028