Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02116 ATGGCTGTACATTCTGAGTCAGTTTCATTAGAGAAGGAGAAGAAATCAAGCAATGGAGTGAATGAGTTGCTGACTTTTAATGCTGAGAATATGCAAAGCAACATGAAAATCATCTATTATAGCCGAACATTTTTATCTATAATTGGCGGAGTTGTTGCTGGTATTTTGGGATTTACAGGCTTGAAGGGATTTGTCTTTTACTTACTTCTCATGGCAATTACTTCACTTGGGCTCATAGCCAAAGCAAGATTTTCAATCCACATGTACTTTGATTCTTGGGATAGAGTGCTACTTGATGGCTTTCTTGGTGGTCTAATGAGAAAAAAAAAAGAAAAAGTCTCAGCGCACCGTTTCAAGATGCAAATCTTCGTCAAGACCCTCACCGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTGAAGGCCAAGATTCAAGACAAGGAAGGGATCCCACCAGACCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAAGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACTCTCCACTTGGTGCTCCGTCTCCGTGGTGGGATGCAAATCTTTGTCAAGACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCTGATACAATAGACAATGTAAAGGCCAAGATTCAGGACAAGGAGGGCATTCCACCAGACCAACAGAGGCTCATCTTTGCCGGCAAACAGCTTGAGGATGGCCGAACATTGGCTGATTACAACATCCAGAAAGAGTCCACCCTACACTTGGTTCTTCGTCTCCGAGGTGGCATGCAAATCTTTGTGAAGACACTCACCGGAAAGACTATCACCCTTGAGGTTGAGAGTTCTGACACCATAGATAACGTGAAGGCCAAGATTCAAGACAAAGAGGGTATCCCACCAGACCAACAGAGGCTTATCTTTGCTGGAAAACAGCTTGAAGATGGCCGAACCCTAGCTGATTACAACATCCAGAAGGAGTCAACTCTCCACCTTGTCTTGAGGCTCCGTGGTGGCATGCAGATTTTCGTGAAGACCCTTACTGGCAAGACAATTACTTTAGAGGTAGAGAGCTCAGATACAATTGACAATGTGAAGGCTAAGATCCAGGACAAGGAGGGTATCCCCCCTGACCAGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGCACACTGGCAGACTACAACATTCAAAAAGAGTCCACCCTTCACCTTGTCCTCCGCCTGAGGGGTGGCATGCAGATATTTGTGAAAACTTTGACTGGGAAGACTATTACCTTGGAGGTTGAAAGTTCAGACACCATTGATAATGTCAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAAGATGGAAGGACCCTTGCTGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTGTTGCGTCTTCGTGGTGGGTTTTAA 1503 0.4558 MAVHSESVSLEKEKKSSNGVNELLTFNAENMQSNMKIIYYSRTFLSIIGGVVAGILGFTGLKGFVFYLLLMAITSLGLIAKARFSIHMYFDSWDRVLLDGFLGGLMRKKKEKVSAHRFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02116 500 CDD Ubl_ubiquitin 196 271 - -
Rops2g02116 500 FunFam Polyubiquitin 3 272 347 - -
Rops2g02116 500 SMART ubq_7 196 267 IPR000626 GO:0005515
Rops2g02116 500 SMART ubq_7 272 343 IPR000626 GO:0005515
Rops2g02116 500 SMART ubq_7 348 419 IPR000626 GO:0005515
Rops2g02116 500 SMART ubq_7 424 495 IPR000626 GO:0005515
Rops2g02116 500 SMART ubq_7 120 191 IPR000626 GO:0005515
Rops2g02116 500 Pfam EMC6 38 106 IPR029008 -
Rops2g02116 500 Gene3D - 348 423 - -
Rops2g02116 500 Gene3D - 112 196 - -
Rops2g02116 500 Gene3D - 272 347 - -
Rops2g02116 500 Gene3D - 197 271 - -
Rops2g02116 500 Gene3D - 424 500 - -
Rops2g02116 500 ProSitePatterns Ubiquitin domain signature. 298 323 IPR019954 -
Rops2g02116 500 FunFam Polyubiquitin 3 424 499 - -
Rops2g02116 500 SUPERFAMILY Ubiquitin-like 271 347 IPR029071 -
Rops2g02116 500 ProSitePatterns Ubiquitin domain signature. 374 399 IPR019954 -
Rops2g02116 500 PANTHER UBIQUITIN 272 349 - -
Rops2g02116 500 CDD Ubl_ubiquitin 348 423 - -
Rops2g02116 500 ProSitePatterns Ubiquitin domain signature. 146 171 IPR019954 -
Rops2g02116 500 ProSiteProfiles Ubiquitin domain profile. 120 195 IPR000626 GO:0005515
Rops2g02116 500 ProSiteProfiles Ubiquitin domain profile. 272 347 IPR000626 GO:0005515
Rops2g02116 500 ProSiteProfiles Ubiquitin domain profile. 196 271 IPR000626 GO:0005515
Rops2g02116 500 ProSiteProfiles Ubiquitin domain profile. 424 499 IPR000626 GO:0005515
Rops2g02116 500 SUPERFAMILY Ubiquitin-like 423 499 IPR029071 -
Rops2g02116 500 ProSiteProfiles Ubiquitin domain profile. 348 423 IPR000626 GO:0005515
Rops2g02116 500 CDD Ubl_ubiquitin 272 347 - -
Rops2g02116 500 ProSitePatterns Ubiquitin domain signature. 222 247 IPR019954 -
Rops2g02116 500 SUPERFAMILY Ubiquitin-like 195 271 IPR029071 -
Rops2g02116 500 FunFam Polyubiquitin 3 120 195 - -
Rops2g02116 500 Pfam Ubiquitin family 350 421 IPR000626 GO:0005515
Rops2g02116 500 Pfam Ubiquitin family 198 269 IPR000626 GO:0005515
Rops2g02116 500 Pfam Ubiquitin family 426 497 IPR000626 GO:0005515
Rops2g02116 500 Pfam Ubiquitin family 274 345 IPR000626 GO:0005515
Rops2g02116 500 Pfam Ubiquitin family 122 193 IPR000626 GO:0005515
Rops2g02116 500 CDD Ubl_ubiquitin 120 195 - -
Rops2g02116 500 FunFam Polyubiquitin 3 348 423 - -
Rops2g02116 500 PRINTS Ubiquitin signature 172 193 IPR019956 -
Rops2g02116 500 PRINTS Ubiquitin signature 151 171 IPR019956 -
Rops2g02116 500 PRINTS Ubiquitin signature 130 150 IPR019956 -
Rops2g02116 500 FunFam Polyubiquitin 3 196 271 - -
Rops2g02116 500 SUPERFAMILY Ubiquitin-like 347 423 IPR029071 -
Rops2g02116 500 SUPERFAMILY Ubiquitin-like 119 195 IPR029071 -
Rops2g02116 500 CDD Ubl_ubiquitin 424 499 - -
Rops2g02116 500 ProSitePatterns Ubiquitin domain signature. 450 475 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02116 Rops-Chr2 33664712 33678543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02116 424 500 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 8.24e-47 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02116 - K08770 egr:104450211 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g02116 2 33664712 33678543 Rops2g02116 2 33664712 33678543 ECH