Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02101 ATGCCTGCTCATAAGTGCTCTCAAGAGACTCCTGAAGATGATGCTCTCATAAACAACCATGATCAACCTGAAAATGAAGTTGAATCCGATGGAAACGATTCATCAAGCAGTGAGGACGAGGATGAATGCATGTTTATAAACTTGTCAGGAGTACTCAAGGAACTTCAGTGTCATATCTGCCAAGGCATCATTCGAAAAACAAGAACTGTAACGGAGTGCCTGCATCGTTTTTGCGGAGAGTGCATAGACAAATTCATGCGCCTTGGTAACAATGAATGCCCTGCTTGCGGTGCACATTGTGATGGTGGCCAACACTCACTGAGAGATGACCCTAACTATGATGCCTTGATTGCTGCTATTTGTCCAGATATTGACAAATATGTGGATAAGGTATCCAATGATAATAAGGATGTGAATGATAAGGATGGGGGAAAGGACTCATCTTCTGGTGATGAGCAGACAGAAATCGAGCCAAGAGGACGCCAAGAAGATGGAGGAGAACGAGAAACACAAATTCCTCAGCATTCTACCGCTACTGATACAGAAGGAGTTGGTGATGCAGAAGCCAGGAGAAAGAATCGCCTTGCCAGATTGGCTGAACATCTTCGTAACTCGGCAAAAGATGAAGATAAGCTGTCTGTATATCTCAAGATTGTCCCTTTCGATGAGCAAAGCATGCCAAGTTTGGAGCGACCGTACCTTTCCTGCGAACCTACAACATCAGTCAAGATCCTGCGCCAGTATGTTGCTCTTAAAACTGGGCTGCATGAGGATGAAGTTGAATTATGGTTGGTGATAAATCCGGATACCAACTTTATATTAGGTGAAAGAACCATTGATCCACAGGAAGATGAGCTACGTGTTCTTGGAGACCAAGAAACTTTGGCTGAACTGTATACTTATCATAATGCCAACTGGGCTCATCTGGTCATGGCTTACAAGGAGAAATTGCAGAACTTGGACACAGCTGGGTCGAGCTGA 981 0.4424 MPAHKCSQETPEDDALINNHDQPENEVESDGNDSSSSEDEDECMFINLSGVLKELQCHICQGIIRKTRTVTECLHRFCGECIDKFMRLGNNECPACGAHCDGGQHSLRDDPNYDALIAAICPDIDKYVDKVSNDNKDVNDKDGGKDSSSGDEQTEIEPRGRQEDGGERETQIPQHSTATDTEGVGDAEARRKNRLARLAEHLRNSAKDEDKLSVYLKIVPFDEQSMPSLERPYLSCEPTTSVKILRQYVALKTGLHEDEVELWLVINPDTNFILGERTIDPQEDELRVLGDQETLAELYTYHNANWAHLVMAYKEKLQNLDTAGSS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02101 326 SMART ring_2 57 96 IPR001841 -
Rops2g02101 326 MobiDBLite consensus disorder prediction 7 27 - -
Rops2g02101 326 Pfam Zinc finger, C3HC4 type (RING finger) 56 96 - -
Rops2g02101 326 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Rops2g02101 326 PANTHER OS11G0578200 PROTEIN 17 127 IPR044592 -
Rops2g02101 326 MobiDBLite consensus disorder prediction 132 170 - -
Rops2g02101 326 CDD RING-HC_RING1-like 54 120 - -
Rops2g02101 326 MobiDBLite consensus disorder prediction 1 39 - -
Rops2g02101 326 SUPERFAMILY RING/U-box 51 100 - -
Rops2g02101 326 ProSiteProfiles Zinc finger RING-type profile. 57 96 IPR001841 -
Rops2g02101 326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 144 IPR013083 -
Rops2g02101 326 MobiDBLite consensus disorder prediction 132 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02101 Rops-Chr2 33465113 33471390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02101 55 99 C3H Transcription Factor Family AT3G23060 41.304 4.67e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02101 K10695 - csav:115697790 150.599