Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02098 ATGCCTGCTCATAAGCGCTCTCAAGAGACTCCTGAAGAGGATGCTCTCATAAACAACCATGATCAACCTGAAAATGAAGTTGAATCCGATGGAAGCCATTCATTGAGCAACGAGGAAAAGGAAGAATATGTGGTTATAAAATTGTCAGATGTACGCAAGGAAGTTCAGTGTCCTATCTGCCTAGGCATCATTCGGAAAACAAGAACTGTAATGGAATGCCTGCATCGGTTTTGCAGAGAGTGCATAGACAAATCCATGCGCCTTGGTAACAATGAATGCCCTGCTTGCCGTACACATTGTGCTAGCCGCCGCTCACTGAGAGATGACCCAAACTATGATGCTTTGATTTCTGCCATCTATCCAGATATTGATAAGTATGAGGAGGAGGAATTTGCTTTGCATGAAGATGAGATGACTCACAATAAGCAGATCCAAGCTTCCATTGCCCAGACTTTACAACGACAAACAGAAGCATCGGGTAAGAAACGGAATGCCAAAACAACAGCAGTGGCTTTTATGAGGAGATCACAAGGTAACTATCGAACTTCACATCTGAGGAGACGGAGAAACTTTAGAAATGCCGGTGACCATCAGGTATCCAATGACATTGAGGATATGAATGATAATGATGGGGGAAAGGACTCATCTTCTGGCGATGAGCAGACAGAAACCAAGCCAAGAAGATGCCCAAAAGATGGAGGAGAACAAGAAACACAATTTCCTCAGCATTCTGCTACTACCGATGCAGATGCAGCTGGTGATGAAAATACTCCAGAAGCGAATAGAGAAATCATAAGTGCATCTGGTACACTTGCCTGGGGAAAAAATGGTCAACGGAGTAACACCCGAGTCAGTGATAAGAATGCCAGAAGAAACAATCGCATCGCTAGATTGGCTGAACATCTTCGTAACTCGGCAGAAAATGATGATGAGCTGTCTGTCCATCTCAAGATTGTCTCTTTCAATAAGCAAAGCGTAACAAGTTTGGAGCAGCCATACCTTTGCTGCGAACCTACAACATCAGTCAAGATCCTGTGCCAGTATGTTGCACTTAAAACAGGGCTGCATGCGGATGAAGTTGAATTATGGTTGGTAATAGATCCGGATGCCAACTTTATAGATGGTGAAAGAACCGTTGATCCACAGAAAGATGAGTTACGTCTTCTTGGAGACCAAGAAACTTTGGCTGAACTGTATTCTTATCCTAATACCATCTGTGGTCATCTGGTCATGGCTTACAAGAAGAAATTGCAGAACTCGGACATAGCTGGGCCGAGCTGA 1281 0.4387 MPAHKRSQETPEEDALINNHDQPENEVESDGSHSLSNEEKEEYVVIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISAIYPDIDKYEEEEFALHEDEMTHNKQIQASIAQTLQRQTEASGKKRNAKTTAVAFMRRSQGNYRTSHLRRRRNFRNAGDHQVSNDIEDMNDNDGGKDSSSGDEQTETKPRRCPKDGGEQETQFPQHSATTDADAAGDENTPEANREIISASGTLAWGKNGQRSNTRVSDKNARRNNRIARLAEHLRNSAENDDELSVHLKIVSFNKQSVTSLEQPYLCCEPTTSVKILCQYVALKTGLHADEVELWLVIDPDANFIDGERTVDPQKDELRLLGDQETLAELYSYPNTICGHLVMAYKKKLQNSDIAGPS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02098 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 127 IPR013083 -
Rops2g02098 426 MobiDBLite consensus disorder prediction 152 290 - -
Rops2g02098 426 ProSiteProfiles Zinc finger RING-type profile. 57 97 IPR001841 -
Rops2g02098 426 SMART ring_2 57 96 IPR001841 -
Rops2g02098 426 MobiDBLite consensus disorder prediction 1 38 - -
Rops2g02098 426 MobiDBLite consensus disorder prediction 192 234 - -
Rops2g02098 426 SUPERFAMILY RING/U-box 40 128 - -
Rops2g02098 426 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Rops2g02098 426 PANTHER OS11G0578200 PROTEIN 13 418 IPR044592 -
Rops2g02098 426 MobiDBLite consensus disorder prediction 237 251 - -
Rops2g02098 426 Pfam Zinc finger, C3HC4 type (RING finger) 56 96 - -
Rops2g02098 426 CDD RING-HC_RING1-like 54 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02098 Rops-Chr2 33414185 33425561 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02098 50 120 C3H Transcription Factor Family AT3G23060 35.135 1.49e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02098 K10695 - zju:107425269 488.034