Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02096 ATGGACACAAGCAGGTCAGAGGGAAAGAGGACCTTGAGGTACAAAGAGGAGGATGATGAGGAAGAAGAAGAAGAGGAAGAGGTAAGTGACATGGGTTTTGGAGAAGATGGTAGAAGGAAGAGAGTAATGACAGATCTATATAGCAAGAGAGGGTCCAAAGCTGGAGGGTCAGTGCCACCTTCTTGTCAGGTGGATAATTGTGATGCTGATCTGAGTGAGGCTAAGCAGTATCACCGGAGACATAAGGTCTGTGAGTACCATGCCAAGGCTCCTGCCGTACACATTGCAGAGTTGCAGCAAAGGTTTTGCCAACAATGTAGCAGATTTCATGTCCTTTCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGACGTTTGGCTGGACATAATGAGCGACGTCGCAAAAGTGTTAATGATTATCACGGAGAATGA 432 0.4537 MDTSRSEGKRTLRYKEEDDEEEEEEEEVSDMGFGEDGRRKRVMTDLYSKRGSKAGGSVPPSCQVDNCDADLSEAKQYHRRHKVCEYHAKAPAVHIAELQQRFCQQCSRFHVLSEFDDSKRSCRRRLAGHNERRRKSVNDYHGE* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02096 143 Pfam SBP domain 62 135 IPR004333 GO:0003677
Rops2g02096 143 SUPERFAMILY SBT domain 60 140 IPR036893 GO:0003677|GO:0005634
Rops2g02096 143 MobiDBLite consensus disorder prediction 17 31 - -
Rops2g02096 143 ProSiteProfiles Zinc finger SBP-type profile. 59 136 IPR004333 GO:0003677
Rops2g02096 143 MobiDBLite consensus disorder prediction 1 16 - -
Rops2g02096 143 FunFam Squamosa promoter-binding-like protein 14 53 123 - -
Rops2g02096 143 PIRSF SBP 1 143 IPR017238 GO:0003677|GO:0003700|GO:0009908
Rops2g02096 143 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 136 IPR044817 GO:0003677
Rops2g02096 143 Gene3D - 52 123 IPR036893 GO:0003677|GO:0005634
Rops2g02096 143 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02096 Rops-Chr2 33383293 33384925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02096 62 139 SBP-box Gene Family AT2G33810 76.923 1.81e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops2g02096 SBP 9.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02096 - - gmx:100527199 226.868