Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02086 ATGGACAACTTTTCTGCACCGTTTTCCACAACAACCACCAACCCATCAACAACCACCATAGCCACCACTAGCATTGCACAACAAGACATGGGTCATCCCCAGAATGTTCACTTCCCTGATAATAGTGGACCCTTTGTGTTGCCTTCAACTCCCTCTCGCATTCCAGTTACACAGTTCCATTTTCCACCACCTTATTTGGCAACGTATAGGCATACATTTCAGCCTCATGGATATCCTTTCTATTCTTCTCCAATGGGGCAAAGCAGTGACCTTTTTAGAATGCAAAATTCTCAACTTCAAGGTTGGTCACAGCCAATGAAAGAGGAAAGGAAGAAGATGGAAGCATGGATGTGCAGAATTGCAAGGGATAGAAGGAAACAAGCAAGACAAAGGAGTAGAAGTTCTGCTTCAGGGGCCACTTCCGTACCAGAAGGGACAATAAGGGGACAACGAGCTGGTACTTTTCGAGAATCAAATGTGAAGGTGACAGTCACCCAAAACAGAAGTTCCTATGTTTTTTACGCTCCAGATGGGAAGAGGCTTGAAGAAATTTTAACTAAGAAGTTGAAAAAAAGCGACATTGGCACCCTGGGCCGCATTGTCCTCCCAAAGAGGGAGGCTGAGGAAAAGCTTCCAGCCCTGTGGGATAAGGATGGAATCGATGTTGTCGTTAAGGATGTATATTCTGAGCTAAGATGGAGCTTGAAATACAAGTACTGGTCTAATAACAAAAGTAGAATGTATGTTCTCGAAAATACAGGGGACCTTGTGAACCATTATGAATTACAAATGGGAGATTCCGTAACCCTTTACGAGGATGAAGTTAAAAATCTGTATGTTTCGACCAAAAAGGAACGAAATGTAGAAGTACCCGTGCTTTCATCAATCAAGGAGGAAGAAGAGCAACAAACACACGGCGGATACAACTATAGCCACATGCATACACACCAAGCTAATGATGATGAAGAAGAAGCATCTCTGGCTTTATTGATAAAAGAGCTTAGCCATCATCATAAGAAGGAAGAAGCAGCAGCTAACAGCTTTTTGACCCTGTGCAATGGTGAAGCTTCTTTTTCAAGTGGAAGACAATACGATAAAATAGCACAACACCAAGTAGCTAGCCAAGAAACCATAGCATCATCCTTGTTCAAGGACCAGACCATAGTGATAGACCATGATCAGCAGAACAGCTTCGATGATGTCTACGAGAACCTTGACAATAGTTTGGAAGTTGAGTGCAATTATCTTCTTGTTGATCACTTGACAGATGAAAATGTAGAGAGAGTATAG 1290 0.4248 MDNFSAPFSTTTTNPSTTTIATTSIAQQDMGHPQNVHFPDNSGPFVLPSTPSRIPVTQFHFPPPYLATYRHTFQPHGYPFYSSPMGQSSDLFRMQNSQLQGWSQPMKEERKKMEAWMCRIARDRRKQARQRSRSSASGATSVPEGTIRGQRAGTFRESNVKVTVTQNRSSYVFYAPDGKRLEEILTKKLKKSDIGTLGRIVLPKREAEEKLPALWDKDGIDVVVKDVYSELRWSLKYKYWSNNKSRMYVLENTGDLVNHYELQMGDSVTLYEDEVKNLYVSTKKERNVEVPVLSSIKEEEEQQTHGGYNYSHMHTHQANDDEEEASLALLIKELSHHHKKEEAAANSFLTLCNGEASFSSGRQYDKIAQHQVASQETIASSLFKDQTIVIDHDQQNSFDDVYENLDNSLEVECNYLLVDHLTDENVERV* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02086 429 Pfam B3 DNA binding domain 186 281 IPR003340 GO:0003677
Rops2g02086 429 Gene3D - 174 291 IPR015300 -
Rops2g02086 429 SUPERFAMILY DNA-binding pseudobarrel domain 184 281 IPR015300 -
Rops2g02086 429 SMART B3_2 185 286 IPR003340 GO:0003677
Rops2g02086 429 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 86 313 IPR044800 GO:0003700
Rops2g02086 429 CDD B3_DNA 184 280 IPR003340 GO:0003677
Rops2g02086 429 MobiDBLite consensus disorder prediction 123 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02086 Rops-Chr2 33194252 33197303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02086 117 338 B3 DNA Binding Superfamily AT1G28300 41.892 1.13e-42 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops2g02086 B3 2.7e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02086 K09287 - gmx:106797573 231.491