Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g02085 ATGGCTGCTTCTTCCGCATCTCTCAATTCCCTCTCCTCTCTTCCCCTCGCTTCATGCCCTCGCTTCTCTCTCTTCCCTTCCTCAACCAACAGACTCTCCTTCTCATTCCTCACCAAAACCCCATCAACAACAACAACCACCCTCTCTCTCTCCCTCACCAAATGCAAACCCTCCCAAGATGAAGATGTTCCCTTCATTCCCCCCGAAGTCCCCGAAGGCTTCGTCGCCCCACCTTCCTTCGATGACGGACCCCTCGAAACCGAAGACGAGATTGCCGCGGCGTACGAGGAGCTCTTTGGTCCCGGATACAGCGGAGTCAGTGTTCTGGGCAACGACATTTACGTGATGGACTCGAAGGTGAAGAAAGACACTGGGTTTGGTTCGGGTGCTAAGAAGGAGAAGATTAGGGATGGGTTTGAAGAGAGGGTGGTTCAGGTTAGGAGGGTCACCAAGGTTGTTAAGGGAGGGAAGCAAATGAGGTTCAGGGCTGTTGTGGTTGTTGGTGATAAGAAAGGACAAGTGGGTGTTGGTGTTGGTAAGGCTAAGGAAGTTATAGCTGCTGTTCAGAAATCTGCGATCAATGCAAGGAGGAATATCATCAATGTACCTATGACTAAGTACTTGACTTTCCCACACAGATCTGATGGAGATTATGGAGCAGCAAAGGTGATGCTCAGACCTGCTTCTCCTGGTACCGGAGTTATTGCAGGTGGAGCTGTGAGAATCGTTCTTGAAATGGCTGGCGTTGAGAATGCTTTGGGAAAGCAACTAGGAAGTAATAATGCACTCAACAATGCCAGAGCAACTCTTGTTGCTGTGCAGAAAATGAAGCAGTTCCGTCAGGTTGCTGAGGAGCGTGGAATCCCTATGGAAGAATTATGGAAATAA 888 0.4955 MAASSASLNSLSSLPLASCPRFSLFPSSTNRLSFSFLTKTPSTTTTTLSLSLTKCKPSQDEDVPFIPPEVPEGFVAPPSFDDGPLETEDEIAAAYEELFGPGYSGVSVLGNDIYVMDSKVKKDTGFGSGAKKEKIRDGFEERVVQVRRVTKVVKGGKQMRFRAVVVVGDKKGQVGVGVGKAKEVIAAVQKSAINARRNIINVPMTKYLTFPHRSDGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLVAVQKMKQFRQVAEERGIPMEELWK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g02085 295 Hamap 30S ribosomal protein S5 [rpsE]. 116 292 IPR005712 GO:0003735|GO:0006412|GO:0015935
Rops2g02085 295 ProSiteProfiles S5 double stranded RNA-binding domain profile. 139 202 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops2g02085 295 SUPERFAMILY dsRNA-binding domain-like 135 204 - -
Rops2g02085 295 Pfam Ribosomal protein S5, C-terminal domain 216 286 IPR005324 GO:0003735|GO:0005840|GO:0006412
Rops2g02085 295 FunFam 30S ribosomal protein S5 128 200 - -
Rops2g02085 295 FunFam 30S ribosomal protein S5 204 295 - -
Rops2g02085 295 Pfam Ribosomal protein S5, N-terminal domain 139 203 IPR013810 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Rops2g02085 295 NCBIfam 30S ribosomal protein S5 138 292 IPR005712 GO:0003735|GO:0006412|GO:0015935
Rops2g02085 295 Gene3D - 206 294 IPR014721 -
Rops2g02085 295 ProSitePatterns Ribosomal protein S5 signature. 156 188 IPR018192 -
Rops2g02085 295 Gene3D - 126 200 - -
Rops2g02085 295 SUPERFAMILY Ribosomal protein S5 domain 2-like 209 287 IPR020568 -
Rops2g02085 295 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN S5 132 290 IPR000851 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g02085 Rops-Chr2 33185558 33187861 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g02085 139 279 Cytoplasmic Ribosomal Protein Gene Family AT2G41840 32.215 2.32e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g02085 K02988 - gmx:100787105 401.749